| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,256,187 – 13,256,302 |
| Length | 115 |
| Max. P | 0.696084 |
| Location | 13,256,187 – 13,256,302 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 91.45 |
| Mean single sequence MFE | -46.33 |
| Consensus MFE | -39.25 |
| Energy contribution | -39.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13256187 115 - 22224390 ----GCAAGAGGGCAAGGGGGCAGGGGAGCCAGCGGGGGCGAGGGCGGUGUAGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC ----....(((.((((..(((((((((((((.((....))...)))......((..(((((((..(((((....))))).......)))))))..))..)))).)))))).)))).))) ( -46.70) >DroSec_CAF1 1892 113 - 1 AGAGGCAAGGGGGCAAGGUGGCAAGGGAGCCAGCGGGG------GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC .(((((((..(((((...((((......))))((((((------((......((..(((((((..(((((....))))).......)))))))..))))))))))))))).)))).))) ( -47.50) >DroSim_CAF1 1914 113 - 1 AGAGGCAAGGGGGCAAGGUGGCAAGGGAGUCAGCGGGG------GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC .(((((((..(((((...((((......))))((((((------((......((..(((((((..(((((....))))).......)))))))..))))))))))))))).)))).))) ( -44.80) >consensus AGAGGCAAGGGGGCAAGGUGGCAAGGGAGCCAGCGGGG______GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC ....((((..(((((.(.((((......)))).)..........((((.(..((..(((((((..(((((....))))).......)))))))..))...)))))))))).)))).... (-39.25 = -39.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:11 2006