a score=0
s X_DroMel_CAF1 1448825 110 + 22224390 GCCGCGUUUACUUAGUUAGUCCGAAA-GAGGCAGAGAAACAAGAGGAGCGAGGGGGGGGGGGGAA------AAGUCGCGGAUUGCGACAGCUCCAAAAUGCGGCGACAAAGGUAAAA
s DroSim_CAF1 35799 106 + 1 GCCGCGUUUACUUAGUUAGUCCGAAA-AAGGGAGAGAAACGAGAGGAGCGAGGGA----GAGGAA------AAGUCGCGGAUUGCGACAGCUCCAAAAUGCGGCGACAAAGGUAAAA
s DroAna_CAF1 65572 113 + 1 GCCGCGUUUACUUAGUUAGUCCGGACGGACAAAAAGAGAUAGGUGGAGAGAGGGG----AGGGAAUACCCGGAGUCGCGGAUUGCGACAGCUCCGAAAUGCCGCGACAAAGGUAAAA