| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,061,458 – 13,061,570 |
| Length | 112 |
| Max. P | 0.958419 |
| Location | 13,061,458 – 13,061,570 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.80 |
| Mean single sequence MFE | -33.82 |
| Consensus MFE | -18.81 |
| Energy contribution | -19.21 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13061458 112 - 22224390 AGGAGAGAGCAGGUCUU--------AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUGUUGCCUCAUUUGUGGCUAUGUUUUUGGAGGCGAACUUAACUGCGAAACGGGUUU .....(((.((((.(((--------((.((((((....)))))).))))).)))).)))((((..((((((((......(((...)))....))))).)))..))))............. ( -34.00) >DroSec_CAF1 11873 84 - 1 AGGAGAGAGCAGGUCUU--------AGCCCGGUUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG----------------------------AACAGGUUU ..(((((((((((((..--------.(((((((((.......)))))))))...))))).))))))))(((.(....).))).----------------------------......... ( -33.20) >DroSim_CAF1 12886 84 - 1 AGGAGAGAGCAGGUCUU--------AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG----------------------------AACAGGUUU ..(((((((((((((..--------.((((((..(.......)..))))))...))))).))))))))(((.(....).))).----------------------------......... ( -29.70) >DroEre_CAF1 11255 111 - 1 AGGAGAGAGCCGGUCUG--------AGCCCGGCUUUAAACUCGGACUGGGUCUUGAUCUAGUUUUCUUACCUCAUUUGUGACUAUGUCUUUGGAGGCAAAGUUGACUGGG-AACAGGUUU ....((((.((((((((--------((............)))))))))).))))..(((((((..(((.((((......(((...)))....))))..)))..)))))))-......... ( -36.70) >DroYak_CAF1 11903 106 - 1 AGGAGAGAGCAGGUCUUGGUCUUAUAACCUGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCCUACCUCAUUUGUG-------------AGGCCAAGUUGACUGCG-AACAGGUUU ........((((..(((((((((((((.((((((....))))))(((((((....))))))).............)))))-------------))))))))....)))).-......... ( -35.50) >consensus AGGAGAGAGCAGGUCUU________AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG__________AGGC_AA_UU_ACUG_G_AACAGGUUU ....(((.(((((...............((((((....))))))(((((((....)))))))...))))))))((((((.................................)))))).. (-18.81 = -19.21 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:45 2006