| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,042,311 – 13,042,407 |
| Length | 96 |
| Max. P | 0.984550 |
| Location | 13,042,311 – 13,042,407 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -35.33 |
| Consensus MFE | -23.01 |
| Energy contribution | -23.90 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.41 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13042311 96 - 22224390 AGCGGAGG-GGGUGGGAAAAUGCCAACCCCUUUUUCGUUCUAAAGUGGGGCACUGUGGUCCGC-GACCAUUUUGUGUUAUGAAAAGGUUAGAAUGGAA ....((((-((((.((......)).))))))))((((((((((.((((.(((..((((((...-))))))..))).)))).......)))))))))). ( -35.40) >DroEre_CAF1 12253 96 - 1 UGGGGAGG-GGGUGGGAAAAUGCCAACCCCUUUUUCGGGCUAAAGUGGAGCACUGUGGUCCGCCUGCAAGU-GUUGUGUUGAAAAGGAUAGGAUGGAA .(..((((-((((.((......)).))))))))..)((((((.((((...)))).))))))........((-.((((.((....)).)))).)).... ( -34.40) >DroYak_CAF1 12716 91 - 1 UGGGGAGGGGGGUGGGAAAAUGCCAACCCCUUUUCCGGGCUAAAGUGGAGCACUGUGGUCCGC-GGCAAUU-GUUGUGAUGAA-----UAUGGUGGAA ..(((((((((((.((......)).)))))))))))((((((.((((...)))).))))))((-(((....-)))))......-----.......... ( -36.20) >consensus UGGGGAGG_GGGUGGGAAAAUGCCAACCCCUUUUUCGGGCUAAAGUGGAGCACUGUGGUCCGC_GGCAAUU_GUUGUGAUGAAAAGG_UAGGAUGGAA .(((((((.((((.((......)).)))))))))))((((((.((((...)))).))))))..................................... (-23.01 = -23.90 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:37 2006