| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,008,064 – 13,008,164 |
| Length | 100 |
| Max. P | 0.997590 |
| Location | 13,008,064 – 13,008,164 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.12 |
| Mean single sequence MFE | -17.34 |
| Consensus MFE | -11.28 |
| Energy contribution | -10.92 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.89 |
| SVM RNA-class probability | 0.997590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13008064 100 + 22224390 CCCACAAUAUGUAUUGUAGUAUUCAUAUUGUCCCC-CAU------ACAGCCGAAAUCCUUUCGGUUUUAC-UGGGCCUUCGAUAAGGCAUCAUCCACAUCCAA------AUCAU ...((((((((.((......)).))))))))...(-(((------(.(((((((.....))))))).)).-)))(((((....)))))...............------..... ( -22.60) >DroSec_CAF1 13329 92 + 1 --------------UGUAGUAUUCAUAUUGCCCCC-CAU------CCAGCAGAAAUCCUUUCGAUUUUAC-UGGGCCUUCGAUAAGGUAUCAUCCACAUCCAAAUCCACAUCAU --------------.((((((....))))))....-...------((((..((((((.....)))))).)-)))(((((....))))).......................... ( -14.00) >DroSim_CAF1 12219 92 + 1 --------------UGUAGUAUUCAUAUUGCCCCC-CAU------CCAGCCGAAAUCCUUUCGAUUUUAC-UGGGCCUUCGAUAAGGCAUCAUCCACAUCCACAUCCACAUCAU --------------.((((((....))))))....-...------((((..((((((.....)))))).)-)))(((((....))))).......................... ( -16.40) >DroEre_CAF1 18529 86 + 1 CCCACAAUA-----UGUAGUAUUCAUAUUCCC----CCU------CCACCCGAAAUCCUUUCGAUUUCAC-UGGGCCUUCGAUAAGGCAUCAGCCAC------------AUCAU ((((.((((-----((.......))))))...----...------......((((((.....))))))..-)))).....(((..(((....)))..------------))).. ( -17.70) >DroYak_CAF1 15916 97 + 1 CCCACAAUA-----UGUAGUAUUCAUAUUCACUCCCCUUCCUCAGCCAUUCGAAAUCCUUUCGAUUUCAGUUGGGCCUUCGAUAAGGCAUCAUCCAC------------AUCAU .....((((-----((.......))))))...............(((..(((((..(((..(.......)..)))..)))))...))).........------------..... ( -16.00) >consensus CCCACAAUA_____UGUAGUAUUCAUAUUGCCCCC_CAU______CCAGCCGAAAUCCUUUCGAUUUUAC_UGGGCCUUCGAUAAGGCAUCAUCCACAUCCA_______AUCAU .............................................(((...((((((.....))))))...)))(((((....))))).......................... (-11.28 = -10.92 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:33 2006