| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,978,626 – 12,978,716 |
| Length | 90 |
| Max. P | 0.550007 |
| Location | 12,978,626 – 12,978,716 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.45 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -11.19 |
| Energy contribution | -10.38 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12978626 90 + 22224390 AUAUAU--AUAAAUGAAAAGAAAACAAAGAGAC-AAAAAAUAGCGAAAAGCUAAUCGAUCGAUUUCUAGUCGAGUUGCAUUUCAACCGAAGGU ......--.....(((((....(((........-......((((.....)))).....(((((.....))))))))...)))))......... ( -12.50) >DroSec_CAF1 9515 87 + 1 A--UAU--AU-AAUGAAAAGAAAACAAAGAGGC-AAAAAAUAGCGAAAAGCUAAUCAAUCGAUUUCUAGUCGAGUUGCAUUUCAACCGAAGGU .--...--..-..(((((......(.....)((-((....((((.....)))).....(((((.....))))).)))).)))))......... ( -12.80) >DroSim_CAF1 111 89 + 1 AUAUAU--AU-AAUGAAAAGAAAACAAAGAGGC-AAAAAAUAGCGAAAAGCUAAUCAAUUGAUUUCUAGUCGAGUUGCUUUUCAACCGAAGGU ......--..-..(((((((..(((........-......((((.....)))).....(((((.....)))))))).)))))))......... ( -13.90) >DroEre_CAF1 5548 90 + 1 AUAA--CAAC-AAAAUAUAAGAAACAAAGAAACGAAAAAAUAGCGAAAAGCUAAUCGAUCGAUUUCUAGUCGAGUUGCAUUGCGGCCGAAGGU ....--....-................((((((((.....((((.....)))).....))).)))))..(((.(((((...)))))))).... ( -16.40) >consensus AUAUAU__AU_AAUGAAAAGAAAACAAAGAGAC_AAAAAAUAGCGAAAAGCUAAUCAAUCGAUUUCUAGUCGAGUUGCAUUUCAACCGAAGGU ...........................(((((........((((.....)))).((....)))))))..(((.((((.....))))))).... (-11.19 = -10.38 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:21 2006