| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,965,267 – 12,965,365 |
| Length | 98 |
| Max. P | 0.930255 |
| Location | 12,965,267 – 12,965,365 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.81 |
| Mean single sequence MFE | -24.13 |
| Consensus MFE | -17.02 |
| Energy contribution | -18.35 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12965267 98 + 22224390 -------------CCAUCA------UUCUAUCGCCAGAAAGUAUUUACUCUUCUCACUCGAGGAAUCCCCUCUGUGAUUUUGGCUCGCCACCCCACAACUACGCCACUGUUACCCCU -------------......------.......((((((((((....)))....((((..((((.....)))).)))))))))))................................. ( -17.10) >DroSec_CAF1 10969 114 + 1 CGGAGUUACAAUUCCAUCAGCAAGUUUCUAUCGCCAGAAAGUAACUACUCUUCUCUCUCGAGGA-CCCCCUCUGUGAUUUUGGCACGGC--CCCCCAACUACGCCACUGAUACCCCU .(((((....)))))(((((............((((((((((....)))..........((((.-...)))).....)))))))..(((--...........))).)))))...... ( -25.80) >DroSim_CAF1 9642 115 + 1 CGGAGUUACAAUUCCAUCAGCAAGUUUCUAUCGCCAGAAAGUAACUACUCUUCUCACUCGAGGAACCCCCUCUGUGAUUUUGGCACGGC--CCCCCAACUACGCCACUGAUACCCCU .(((((....)))))(((((............((((((((((....)))....((((..((((.....)))).)))))))))))..(((--...........))).)))))...... ( -29.50) >consensus CGGAGUUACAAUUCCAUCAGCAAGUUUCUAUCGCCAGAAAGUAACUACUCUUCUCACUCGAGGAACCCCCUCUGUGAUUUUGGCACGGC__CCCCCAACUACGCCACUGAUACCCCU ...............(((((............((((((((((....)))....((((..((((.....)))).)))))))))))..(((.............))).)))))...... (-17.02 = -18.35 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:11 2006