| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,956,362 – 12,956,476 |
| Length | 114 |
| Max. P | 0.671037 |
| Location | 12,956,362 – 12,956,476 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -27.38 |
| Energy contribution | -29.18 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12956362 114 - 22224390 CGUGUUGCCGACAGCAUCGAUCCAUGGCCAUUUCGCUGCCCAGAUCGCUGUACGUCUCUGCAAUGUCGCCGGUGCCACACCAUUUUGUGCCUGUGAGUAUGG-AA-UUUAUAAUGC- .(((..(((((((((...((((...(((.........)))..))))))))).((.(........).)).))))..)))...((((..(((......)))..)-))-).........- ( -28.00) >DroVir_CAF1 1657 110 - 1 CGUGCUGGCGACAGCAGCGGUCCAUGGCCAUCUCGCUGCCCAGAUCGCUGUACGUUUCGGCAAUAUCUCCCGUGCCACACCAUUUGGUGCCUGUUUCGAAAG-AGAG-CGAG----- ..((((((.(((.(((((((((...(((.........)))..)))))))))..)))))))))....(((.((..(((.......)))..)...((((....)-))))-.)))----- ( -36.30) >DroGri_CAF1 1597 113 - 1 CGUGCUGGCGACAGCAGCGAUCCAUGGCCAUCUCGCUGCCCAAAUCCCUGUACGUCUCAGCAAUAUCGCCAGUGCCGCACCACUUGGUGCCUAUAUACAAAA-AAAA-AAAA-CAA- .(..(((((((..(((((((............)))))))........(((.......))).....)))))))..).(((((....)))))............-....-....-...- ( -36.60) >DroYak_CAF1 1799 115 - 1 CGUGUUGGCGACAGCAUCGAUCCAUGGCCAUUUCGCUGCCCAGAUCGCUGUACGUAUCUGCGAUGUCGCCAGUGCCGCACCACUUUGUGCCUGUGAAGAGGAUCA-U-AAUAAUCAU .(..((((((((((((.(((((...(((.........)))..))))).))).(((....))).)))))))))..).((((......)))).(((((......)))-)-)........ ( -38.00) >DroMoj_CAF1 1928 110 - 1 CGUGCUGGCGACAGCAGCGGUCCAUUUCCAUCUCGCUGCCCAGGUCGCUGUACGUUUCGGCAAUGUCACCAGUGCCGCACCACUUGGUGCCUGUGUGAAAAA-UAAU-CGGA----- (((((.((((((.(((((((............)))))))....))))))))))).(((((..((.(((((((....(((((....)))))))).))))...)-)..)-))))----- ( -42.20) >DroPer_CAF1 1809 112 - 1 CGUGCUGACGACAGCAGCGAUCCAUGGCCAUCUCGCUGCCCAGAUCGCUGUACGUCUCCGCAAUGUCGCCAGUGCCACACCACUUGGUGCCUGGAAAGUCGG----U-CGGAGCGGA (((.((((((((.(((((((((...(((.........)))..))))))))).....((((....(.((((((((......))).)))))).))))..))).)----)-))).))).. ( -41.70) >consensus CGUGCUGGCGACAGCAGCGAUCCAUGGCCAUCUCGCUGCCCAGAUCGCUGUACGUCUCGGCAAUGUCGCCAGUGCCACACCACUUGGUGCCUGUGAAGAAAA_AA_U_CAAA_____ .(..((((((((((((((((((..(((.((......)).))))))))))))..((....))..)))))))))..)..((((....))))............................ (-27.38 = -29.18 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:05 2006