Locus 4952

Sequence ID X_DroMel_CAF1
Location 12,926,879 – 12,926,990
Length 111
Max. P 0.736271
window8071

overview

Window 1

Location 12,926,879 – 12,926,990
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.36
Mean single sequence MFE -19.05
Consensus MFE -13.51
Energy contribution -13.91
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.44
SVM RNA-class probability 0.736271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12926879 111 + 22224390
AUAACCACUUGUUCUCAAGCACUUUACACGUACAAUAAACUCUAAAAAAAACCAUUAGUAAUGUGCCAAGCUGCUGUGGUUAUCA----GAAUACUAAACAAAACUAUUAAUAAA-----
((((((((.((....))(((((((..(((((((........................)).)))))..))).))))))))))))..----..........................----- ( -16.26)
>DroSec_CAF1 3565 118 + 1
GUAACCACUUGUUCUCAAGCACUUUACAC-CACAAUAAACUCAGA-AAAAACAAUUAGUAAUGUGCCAAGCAGCUGUGGUUAUCAUUUUGAUAACUAAAAAGAACUAUUCAUAAACUUCG
..........(((((...((((.((((..-...............-...........)))).))))..........((((((((.....))))))))...)))))............... ( -17.69)
>DroSim_CAF1 3524 114 + 1
AUAACCACUUGUUCUCAAGCACUUUACAC-CACAAUAAACUCUGA-AAAAACCAUUAGUAAUGUGCCGAGCAGCUGUGGUUAUCA----GAAUACUAAAUAGAACUAGUAAUAAACUUCA
((((((((..((((((..((((.((((..-...............-...........)))).)))).))).))).))))))))..----...(((((........))))).......... ( -22.69)
>DroEre_CAF1 3383 114 + 1
GUAACCACUUGUUCUCAAGCACUUAACAU-UACAAUUAACUCUCA-AAAAACAAUUAGUAAGGUGCCAAGCUGCUGUGGUUAUAA----AAAUGCUUAGUAAAACAAUUAAUAAUCUUGG
((((((((..((......((((((.((..-...............-...........)).))))))......)).))))))))..----............................... ( -16.99)
>DroYak_CAF1 3376 114 + 1
AUAACCACUUGUUCUCAAGCACUUUGCAU-AACAUUUAACUCUCA-AAAAGGUAUUAGUAUUAUGCCAAGCUGCUGUGCUUAUAA----GAAGGUUAAAUAAAACAACUAAUAAUCUUCG
.(((((.(((((.....(((((((.((((-((.(((..(((....-....)))...))).)))))).))).))))......))))----)..)))))....................... ( -21.60)
>consensus
AUAACCACUUGUUCUCAAGCACUUUACAC_CACAAUAAACUCUCA_AAAAACAAUUAGUAAUGUGCCAAGCUGCUGUGGUUAUCA____GAAUACUAAAUAAAACUAUUAAUAAACUUCG
((((((((..((......((((.((((..............................)))).))))......)).))))))))..................................... (-13.51 = -13.91 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:47 2006