Locus 4951

Sequence ID X_DroMel_CAF1
Location 12,926,538 – 12,926,639
Length 101
Max. P 0.856319
window8070

overview

Window 0

Location 12,926,538 – 12,926,639
Length 101
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 73.33
Mean single sequence MFE -22.57
Consensus MFE -12.63
Energy contribution -14.53
Covariance contribution 1.90
Combinations/Pair 1.20
Mean z-score -1.92
Structure conservation index 0.56
SVM decision value 0.81
SVM RNA-class probability 0.856319
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12926538 101 + 22224390
ACCGAUCCGAUAAUGUAUUCCAUCUUAUCAUAUAUGUAAUGAACAUUUGGAUUUUUCCAAUUGUGGUAGCUAAAAGCUUUUAAGAAGGGUGGAAUUUCUAA----
................((((((((((.((.............(((.(((((....))))).)))...(((.....))).....))))))))))))......---- ( -21.20)
>DroSec_CAF1 3218 104 + 1
ACCGAUCCGAUAAUGUAUUCCAUGUUAUC-UACAUGUAAUGCACAUUUGGAUUUUUUCAAUUGUGGUAGCCAAAAGCUUUCAAGAUGGUUGAAAUUUCUAAAACA
...(((((((...((((((.(((((....-.))))).))))))...))))))).((((((((.(((.(((.....))).)))....))))))))........... ( -25.80)
>DroYak_CAF1 3078 97 + 1
AAUAU--------GGAAUUCUACGUUAUCAUUUAUGAUAUGCAUAUUUGGAUUUUCCCAAUUGUGGUAGUCGAAGGCUUUUAACUUUGUUGGAAUUUCCAAAACA
....(--------((((..((((..(((((....)))))..((((.((((......)))).)))))))).(((((........))))).......)))))..... ( -20.70)
>consensus
ACCGAUCCGAUAAUGUAUUCCAUGUUAUCAUAUAUGUAAUGCACAUUUGGAUUUUUCCAAUUGUGGUAGCCAAAAGCUUUUAAGAUGGUUGGAAUUUCUAAAACA
..............(((((.(((((......))))).)))))...((((((...((((((((.(((.(((.....))).)))....))))))))..))))))... (-12.63 = -14.53 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:46 2006