Locus 4937

Sequence ID X_DroMel_CAF1
Location 12,865,682 – 12,865,778
Length 96
Max. P 0.924215
window8052

overview

Window 2

Location 12,865,682 – 12,865,778
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.88
Mean single sequence MFE -37.92
Consensus MFE -28.33
Energy contribution -26.25
Covariance contribution -2.08
Combinations/Pair 1.44
Mean z-score -1.42
Structure conservation index 0.75
SVM decision value 1.16
SVM RNA-class probability 0.924215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12865682 96 + 22224390
CUGCCCAUCAUGUCGCACCAAGUGGGUUUGGUGUGGCAGGGCGGCAACGGCUGGGACGAUCUUGUGCGGGAGCAGGUGGGUCGCAC---UAAUUCGCAA------
((((((....((((((((((((....))))))))))))))))))...(((.(((..(((((((.(((....))).).))))))..)---))..)))...------ ( -41.30)
>DroVir_CAF1 127663 102 + 1
CUGCCCAUAAUGUCGCAUCAGGUUGGUCUGGUGUGGCAGGGCGGCAAUGGCUGGGACGACUUGGUGCGCGAACAGGUUAGUCAAGC---UCAUGGCCUAAGCCCC
..((((....((((((((((((....))))))))))))))))(((.((((((..(((((((((.........)))))).))).)))---.))).)))........ ( -43.70)
>DroPse_CAF1 122022 93 + 1
CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGUCAGGUGGCAACGGCUGGGAUGACCUCGUCCGCGAACAGGUGAGUGG-AC---UCUGUCCU--------
..((.((((.((((((((((((....)))))))))..(((.((....)).)))(((((....)))))....))))))).))((-((---...)))).-------- ( -35.90)
>DroWil_CAF1 78554 91 + 1
CUGCCCAUUAUGUCACACCAGGUAGGCCUGGUGUGGCAAGGUGGCAAUGGCUGGGACGAUUUGGUGCGCGAACAGGUAAGUAA-AC---AUCUUC----------
.((((.((..((((((((((((....))))))))))))..)))))).((.(((...((........))....))).)).....-..---......---------- ( -33.30)
>DroAna_CAF1 76777 99 + 1
CUGCCCAUCAUGUCGCACCAAGUGGGUUUGGUGUGGCAGGGCGGCAACGGCUGGGACGAUCUUGUCCGGGAACAGGUAAGUUCUUAAAAUAUUUAAGGA------
((((((....((((((((((((....))))))))))))((.((....)).)).(((((....))))))))..))).....(((((((.....)))))))------ ( -37.40)
>DroPer_CAF1 99784 93 + 1
CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGUCAGGUGGCAACGGCUGGGAUGACCUCGUCCGCGAACAGGUGAGUGG-AC---UCUGUCCU--------
..((.((((.((((((((((((....)))))))))..(((.((....)).)))(((((....)))))....))))))).))((-((---...)))).-------- ( -35.90)
>consensus
CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGCAAGGCGGCAACGGCUGGGACGACCUCGUCCGCGAACAGGUGAGUCG_AC___UCUUUCCC________
...(((....((((((((((((....))))))))))))((.((....)).)))))...((((.((......))))))............................ (-28.33 = -26.25 +  -2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:29 2006