Locus 4934

Sequence ID X_DroMel_CAF1
Location 12,857,993 – 12,858,091
Length 98
Max. P 0.830045
window8047

overview

Window 7

Location 12,857,993 – 12,858,091
Length 98
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 89.23
Mean single sequence MFE -28.67
Consensus MFE -23.61
Energy contribution -22.95
Covariance contribution -0.66
Combinations/Pair 1.15
Mean z-score -2.44
Structure conservation index 0.82
SVM decision value 0.71
SVM RNA-class probability 0.830045
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12857993 98 - 22224390
GAACGGAAAAGGGGGCGGCGAAA-AAGCAAAAGCCGCAACAAAAACAAGCAGGCGAAAGAUGAAACUCGUUUUGGCCUUUUUCUGGUUACAAAACGCGC
...((((((((((.(((((....-........)))))..(((((.....((..(....).)).......))))).)))))))))).............. ( -27.90)
>DroSec_CAF1 56323 99 - 1
GGACGGGAAAAGGGGCGGCGAAAAAAGCAGAAGCCGCAAGAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC
...((.(.......(((((.............)))))......(((.(((((((..((((((.....)))))).)))...)))).)))......).)). ( -27.02)
>DroEre_CAF1 60319 96 - 1
AAACGGAAGAGGGCGCGGCGGAAAG---AGAAGCCGCAACAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC
...(....)...(((((((((....---.....))))......(((.(((((((..((((((.....)))))).)))...)))).)))......))))) ( -31.10)
>consensus
GAACGGAAAAGGGGGCGGCGAAAAAAGCAGAAGCCGCAACAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC
...(((.((((((.(((((.............)))))...................((((((.....))))))..)))))).))).............. (-23.61 = -22.95 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:25 2006