Locus 4924

Sequence ID X_DroMel_CAF1
Location 12,826,848 – 12,826,968
Length 120
Max. P 0.731781
window8033

overview

Window 3

Location 12,826,848 – 12,826,968
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.66
Mean single sequence MFE -27.53
Consensus MFE -21.90
Energy contribution -22.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.80
SVM decision value 0.43
SVM RNA-class probability 0.731781
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12826848 120 - 22224390
CAUUAAUAAUUCGGUGUAACUAUAGCUAUAUACGAAACUUUUCGGAUGUAUCGCAAUAAUUAUAGAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA
.........(((.((((((((......................((.(((((((((...........)))))))))))(((((...........)))))........)))).)))).))). ( -28.60)
>DroSec_CAF1 24833 114 - 1
CAUAAAUAAUUCGGUA------UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA
.........(((.((.------((((((...(((.........((.(((((((((...........)))))))))))(((((...........)))))...))).))))))..)).))). ( -24.60)
>DroSim_CAF1 34522 114 - 1
CAUAAAUAAUUCGGUG------UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCUCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA
.........(((.(((------((((((...(((.........(((.((((((((...........)))))))))))(((((...........)))))...))).))))).)))).))). ( -29.40)
>consensus
CAUAAAUAAUUCGGUG______UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA
.........(((.(((......(((((................((.(((((((((...........)))))))))))(((((...........)))))........))))).))).))). (-21.90 = -22.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:12 2006