| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,823,048 – 12,823,151 |
| Length | 103 |
| Max. P | 0.526319 |
| Location | 12,823,048 – 12,823,151 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 89.00 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12823048 103 + 22224390 UGCCAACAAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAAAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAUCUCAAUCGAGGCCGAAG .(((...............((....))...((((.............(((.....)))..........(((.........)))..))))......)))..... ( -17.10) >DroSec_CAF1 21084 103 + 1 UGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAGAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG .(((..((((.((((....((....))....))))..(((.......(((.....)))..........(((.........)))...))).)))).)))..... ( -20.00) >DroSim_CAF1 30850 103 + 1 AGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAGAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG ((((..((((.((((....((....))....))))..(((.......(((.....)))..........(((.........)))...))).)))).)))).... ( -21.10) >DroYak_CAF1 29709 97 + 1 UGCCAGGGUGAUUUUAAAUGCGAAAGCGGAGGGAAGAGAAAUCAUAAGCCAGCAAGGUAACCAAAACAGAGGAAUCA------AAUCUCAAACGAGGCUGCAG (((.((..(((((((...(((....)))..((...((....))....(((.....)))..))........)))))))------..((((....))))))))). ( -21.40) >consensus UGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAAAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG .(((...............((....))...(((..............(((.....)))..((........))..............)))......)))..... (-14.48 = -14.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:06 2006