Locus 4915

Sequence ID X_DroMel_CAF1
Location 12,796,055 – 12,796,149
Length 94
Max. P 0.974892
window8015

overview

Window 5

Location 12,796,055 – 12,796,149
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.77
Mean single sequence MFE -33.20
Consensus MFE -15.34
Energy contribution -15.38
Covariance contribution 0.04
Combinations/Pair 1.24
Mean z-score -2.32
Structure conservation index 0.46
SVM decision value 1.74
SVM RNA-class probability 0.974892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12796055 94 + 22224390
----UUCGCCGCCAGCACGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG--GAAAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA
----((((((((((((((...-----------(((((((((((.....))))(((((.((((...))))--.)))))))))))))))))).))-.)))-)))-------........... ( -37.20)
>DroSim_CAF1 2377 94 + 1
----UUAGCCGCCAGCUCGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG--GAAAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA
----...((((.......(((-----------(((((((((.(((((.....(((((.((((...))))--.)))))(((.....))))))))-))))-)))-------))))).)))). ( -36.50)
>DroEre_CAF1 2607 93 + 1
----UUCGC-GACACCUCGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGUACCGCCGAUG--GAGAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA
----.....-....((..(((-----------(((((((((.(((((.((....((((((((.((...)--).).)))))))...)).)))))-))))-)))-------)))))..)).. ( -30.60)
>DroYak_CAF1 2343 100 + 1
GAUUUUCGCAGGCAGCUCGUG-----------UUUUUGCUUUGCUCAUUAAAACUUUGCACCGCCGAUGGGGAGAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCAGCA
..............(((.(((-----------(((((((((.(((((.((....((((((((.((.....)).).)))))))...)).)))))-))))-)))-------)))))..))). ( -33.50)
>DroAna_CAF1 2501 107 + 1
----AUGCCCGGCAGCACCGGCUUUUUGGAAUUUUUCGCUUUGCUCAUUAAAAGUUUGA-------GGA--AAAAGUGUGGAAAGUGCCGAGCGAAGCAGAAACGACCCAAAAACCAGAA
----..(((.((.....)))))(((((((....(((((((((((((......(.(((..-------...--.))).)..((......))))))))))).))))....)))))))...... ( -28.20)
>consensus
____UUCGCCGCCAGCUCGUG___________UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG__GAAAGUGCGAAAAGUGCUGAGC_AGGC_GAA_______AAUAUCCGGCA
..................................(((((((.(((((.((....(((((((..............)))))))...)).))))).)))).))).................. (-15.34 = -15.38 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:57 2006