| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,763,965 – 12,764,058 |
| Length | 93 |
| Max. P | 0.900487 |
| Location | 12,763,965 – 12,764,058 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.38 |
| Mean single sequence MFE | -14.68 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.08 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.900487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12763965 93 - 22224390 ACACUUGCUUCACACACACACACACA-GCGGCAGAGAGUCCUUUGCAC--------A--CACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU ..........................-((.(((((((((....(((..--------.--............)))..))))))).))....))............ ( -15.86) >DroSec_CAF1 19254 96 - 1 ACACUUGCCACACUCACACACACACUUACGGCAGAGAGUCCUUUGCAC--------ACACACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....((((....................))))(((((..(..(((..--------...............)))..)..)))))((....))............ ( -14.48) >DroEre_CAF1 19239 97 - 1 ACACUUGCUUCUCACAC----ACACA-ACGGCAGAGAGUCCUUUGCACUAACACAUA--CAGAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....((((........----.(...-..)(((((((((....(((...........--............)))..))))))).))...))))........... ( -13.70) >consensus ACACUUGCUUCACACACACACACACA_ACGGCAGAGAGUCCUUUGCAC________A__CACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....(((..............(......)(((((((((....(((.........................)))..))))))).))....)))........... (-13.08 = -13.08 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:47 2006