| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,761,550 – 12,761,647 |
| Length | 97 |
| Max. P | 0.735178 |
| Location | 12,761,550 – 12,761,647 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.48 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -18.34 |
| Energy contribution | -18.34 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.735178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12761550 97 - 22224390 CACACACACACAACGAUAUAUUGAGAAAAUCGUUGUGUAAUCCUGGUGUGC-CAGAA-----UCA----AAGGGUGGGUUUGUAUCUCCAAGUCGGGGAAAAACGUU ....(((((((((((((...........))))))))))....((((....)-)))..-----...----....))).((((...(((((.....))))).))))... ( -28.60) >DroSec_CAF1 16547 97 - 1 -----ACACGCAACGAUAUAUUGGAAAAAUCGUUAUGUAAUCCUGGUGUGC-CAGAAUCGAAUCA----AAGGGUGGGUUUGAUUCUCCAAGCCGGGCAAAAACGUU -----..(((.((((((...((....)))))))).)))...((((((.((.-.(((((((((((.----.......))))))))))).)).)))))).......... ( -26.80) >DroEre_CAF1 17744 92 - 1 -----ACACGCAGCGAAAUAUUGGGAAAAUCGUUGUGUAAUCCUGGUGUGCCCAGAA-----UCA----AAGGGUGGGUUUGAUUCCCCAGGCCGG-GAAAAACGUU -----..(((((((((.............)))))))))..(((((((.(((((....-----...----..))))(((........)))).)))))-))........ ( -30.32) >DroYak_CAF1 19104 97 - 1 ----CACACGCAACGAGAUAUUGGGAAAAUCGUUGUGUAAUCCUGGUGUGC-CAGAA-----UCAGAAAAAGGGUGGGUUUGAUUCUCCAAGCCGGGGAAAAACGUU ----...(((((((((.............)))))))))..(((((((.((.-.((((-----(((((...........))))))))).)).)))))))......... ( -29.32) >consensus _____ACACGCAACGAUAUAUUGGGAAAAUCGUUGUGUAAUCCUGGUGUGC_CAGAA_____UCA____AAGGGUGGGUUUGAUUCUCCAAGCCGGGGAAAAACGUU .......(((((((((.............)))))))))..(((((((.......((......))..........((((........)))).)))))))......... (-18.34 = -18.34 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:44 2006