Locus 4890

Sequence ID X_DroMel_CAF1
Location 12,711,188 – 12,711,289
Length 101
Max. P 0.921432
window7981

overview

Window 1

Location 12,711,188 – 12,711,289
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 92.28
Mean single sequence MFE -21.22
Consensus MFE -16.66
Energy contribution -16.86
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -2.09
Structure conservation index 0.79
SVM decision value 1.14
SVM RNA-class probability 0.921432
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12711188 101 + 22224390
AAAACGUUCAAGAGGUAAACAUGUUACACUUCUGAAUUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA
.....(((((..((((((.....)))).))..))))).........(((((......((((((((.....)))))))).((((......)))))))))... ( -23.70)
>DroSec_CAF1 63440 101 + 1
AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUAAAA
.....((((.((((((...........)))))).))))........(((((......((((((((.....)))))))).((((......)))))))))... ( -21.50)
>DroSim_CAF1 47411 101 + 1
AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA
.....((((.((((((...........)))))).))))........(((((......((((((((.....)))))))).((((......)))))))))... ( -21.20)
>DroEre_CAF1 63541 101 + 1
AAUACGUUCAAGAGGUAAAUUUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCGGCGCAGAGGCAAAUGCAA
......((((..((((((.....)))).))..)))).....((((............((((((((.....)))))))).(((........)))...)))). ( -25.20)
>DroYak_CAF1 67717 101 + 1
AAUACGUGUAAGAGGUAAACAUGUUUCACUCCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUUCUCGACCGGAGCAGUGGCAAAUACAA
.....((((....(((....((((((((....)))))))).................(((.((((.....)))).))).)))...((....))..)))).. ( -14.50)
>consensus
AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA
......((((.(((((((.....)))).))).))))..........(((((......((((((((.....)))))))).((((......)))))))))... (-16.66 = -16.86 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:27 2006