Locus 4889

Sequence ID X_DroMel_CAF1
Location 12,709,843 – 12,709,936
Length 93
Max. P 0.915124
window7980

overview

Window 0

Location 12,709,843 – 12,709,936
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 86.74
Mean single sequence MFE -19.49
Consensus MFE -17.83
Energy contribution -18.27
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.91
SVM decision value 1.10
SVM RNA-class probability 0.915124
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12709843 93 - 22224390
GGCAGGGUAGUAAAAUAAAUAUUUCCAAAGCGAAAAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCGCAG
..(((((((.........((((((((((((((((..((...))..)))))(....)..))))))))))).........)))))))........ ( -23.47)
>DroSec_CAF1 61924 93 - 1
AGCACGGUAGUAAAACAAAUAUUUCCAAAGUGAAGAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAGCAAACAAUAUCCUGAAUCGCAU
..((.((((.........((((((((((((((((((......)).)))))(....)..))))))))))).........)))).))........ ( -16.77)
>DroEre_CAF1 62060 93 - 1
GGCAGGGUAGUAUAAUAAAUAUUUCAAAAGUGACAAGGGGUUUCAGUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCACAU
..(((((((.........(((((((.(((.(((((.(.((......)).).)).))).))).))))))).........)))))))........ ( -18.37)
>DroYak_CAF1 66351 93 - 1
GCCAGGGUACUAUUAUAAAUAUUUCUAAAGUGACAAAGGGUUCACUUCGCGUGAUCAAUUUGGAAAUAUAACAAACACAAUCCUGAAUCACAC
..((((((..........(((((((((((.(((........((((.....))))))).)))))))))))..........))))))........ ( -19.35)
>consensus
GGCAGGGUAGUAAAAUAAAUAUUUCCAAAGUGAAAAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCACAU
..(((((((.........((((((((((((((((...........)))))(....)..))))))))))).........)))))))........ (-17.83 = -18.27 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:26 2006