Locus 4881

Sequence ID	X_DroMel_CAF1
Location	12,693,645 – 12,693,737
Length	92
Max. P	0.533412

overview

Window 6

Location	12,693,645 – 12,693,737
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	71.20
Mean single sequence MFE	-13.12
Consensus MFE	0.00
Energy contribution	0.00
Covariance contribution	0.00
Combinations/Pair	nan
Mean z-score	-1.49
Structure conservation index	-0.00
SVM decision value	-0.00
SVM RNA-class probability	0.533412
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12693645 92 - 22224390
UUGUUAAAUUGGUCCGUUUUGAAUUUCUGUACAACUAU-UAAAUGUUGCAUCUCAGCAUUUUCCCUUAAUGGUCCAUCCUGCAAGUGGCCAAC
((((.....(((.(((((..(((..((((..((((...-.....)))).....))).)..)))....))))).)))....))))......... ( -17.10)
>DroSec_CAF1 46605 88 - 1
UUUUUAAAUUGGUCCGUUUCAAAUUACUGUAUAACUAU-UAAAUAUG----CUUUACAUUUUCCCUUAGUUGUCCAUCCUGCAAUUGACCCAC
..........((((.(((.((......((.(((((((.-.....(((----.....))).......))))))).))...)).))).))))... ( -10.92)
>DroSim_CAF1 32704 87 - 1
UUGUUAAAUUGGUCCGUUUCAAAUUACUGUACAACUAU-UAAAUAU-----CUUUACAUUUUCCCUUAGUUGUCCAUCCUGCAAUUGACCCAC
..........((((.(((.((......((.(((((((.-.((((..-----......)))).....))))))).))...)).))).))))... ( -11.30)
>DroEre_CAF1 45939 76 - 1
UGGUGAAAUUGGUCCGUUUCAAAUUUCUGUACAACUAUUUGAAUAUGGCAUCUUAAUAUUUUCCCAUAG---AAUAUUC--------------
(((..((((.((((((((((((((............))))))).)))).))).....))))..)))...---.......-------------- ( -13.10)
>DroYak_CAF1 50179 84 - 1
---UUAAAUUUGUA---GUUAAAUUUCUGUACAACCAUUUAAAUAUGGCAUCUUAAUAUUUUCCCAUUG---AAUGCCCUGCAAGUGACCCAC
---....(((((((---(((((((............))))))....(((((.(((((........))))---))))))))))))))....... ( -13.20)
>consensus
UUGUUAAAUUGGUCCGUUUCAAAUUUCUGUACAACUAU_UAAAUAUGGCAUCUUAACAUUUUCCCUUAGU_GUCCAUCCUGCAAGUGACCCAC
............................................................................................. (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:14 2006