| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,691,747 – 12,691,852 |
| Length | 105 |
| Max. P | 0.551314 |
| Location | 12,691,747 – 12,691,852 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -15.68 |
| Energy contribution | -17.23 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12691747 105 + 22224390 AUAAAUGUACC------CAAUGGUAACUCGAUCGAAAGCGAUGCCAAGAUUACUGGCCUAAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUUAAUUAUG--AUUAAGUGAU------- .......((((------....)))).....((((....))))((((.......)))).(((((((((.......)))))))))((((((((((.....)))--))..))))).------- ( -19.20) >DroSec_CAF1 44771 113 + 1 AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAAGCAAUGCCAACAGCACUGGCCUUAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUAAC------- .....(((.((((.((..((((((((...............(((.....))).((((...(((((((.......))))))).))))))))))))..)).)))).)))......------- ( -22.50) >DroSim_CAF1 30825 120 + 1 AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAUGCAAUGCCAAGAGAACUGGCCUAAAUUCAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUACCAAAAUUA .....(((.((((.((..((((((((...((.(((((((...((((.......))))....((((.......))))))))))))).))))))))..)).)))).)))............. ( -26.10) >consensus AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAAGCAAUGCCAAGAGAACUGGCCUAAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUAAC_______ .........(((((....((((((((................((((.......)))).(((((((((.......)))))))))...))))))))...))))).................. (-15.68 = -17.23 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:11 2006