Locus 4872

Sequence ID X_DroMel_CAF1
Location 12,669,240 – 12,669,352
Length 112
Max. P 0.628402
window7953

overview

Window 3

Location 12,669,240 – 12,669,352
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 82.04
Mean single sequence MFE -23.32
Consensus MFE -12.62
Energy contribution -12.66
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.11
Structure conservation index 0.54
SVM decision value 0.19
SVM RNA-class probability 0.628402
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12669240 112 + 22224390
GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA-CCCAUACCCAUACACUUGGGUGAGAGCCAACU
............((((.((((...)))).))))..((((((((..(......)..))))))))........((.(((.((-((((............)))))).))))).... ( -29.40)
>DroSec_CAF1 23087 112 + 1
GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA-CCCAUAUCCAUACACUUGGGUGAGAGCCAACU
............((((.((((...)))).))))..((((((((..(......)..))))))))........((.(((.((-((((............)))))).))))).... ( -29.40)
>DroEre_CAF1 22235 96 + 1
GAACUUUUCAAAAGAUUCAACUUUGCUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAAGUCUCACA-CCCAUACCUAUACA----------------AC
(((((((.....((((.((.......)).))))..((((((((..(......)..))))))))......))))).))...-..............----------------.. ( -12.90)
>DroYak_CAF1 26182 113 + 1
GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACAACACAUACCUAUACACUUGGGUGAGAGGCAACC
....(((((..........((((((((.....((.((((((((..(......)..)))))))).))))))))))...........((((((......)))))).))))).... ( -27.20)
>DroAna_CAF1 27548 91 + 1
AAACGCCUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGAGCAAUUUGAUUAGGGCUCAUAAACAAACAAGGGUACACU-GCCACAU---UACA------------------
....((((....((((.((((...)))).))))..((((((((..(......)..))))))))........)))).....-.......---....------------------ ( -17.70)
>consensus
GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA_CCCAUACCCAUACACUUGGGUGAGAG_CAACC
............((((.((((...)))).))))..((((((((..(......)..)))))))).................................................. (-12.62 = -12.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:01 2006