Locus 4866

Sequence ID X_DroMel_CAF1
Location 12,660,699 – 12,660,791
Length 92
Max. P 0.944076
window7945

overview

Window 5

Location 12,660,699 – 12,660,791
Length 92
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -29.70
Consensus MFE -24.98
Energy contribution -24.85
Covariance contribution -0.13
Combinations/Pair 1.11
Mean z-score -2.31
Structure conservation index 0.84
SVM decision value 1.34
SVM RNA-class probability 0.944076
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12660699 92 - 22224390
-CUGUAGAUGGGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAUUUCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGUUUGGCGA---ACUGCA
-..((((...(((((((((((.((.(((.....))).)).....((((.((....)).))))))).)))))))).(((....)))..---.)))). ( -28.80)
>DroSec_CAF1 14397 94 - 1
-CUGCAGAUGAGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAU-UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGAUGGACUGCA
-..((((.(((.((((((((..((.(((.....))).))...((-(((.((....)).))))))).)))))))))(((....)))......)))). ( -29.00)
>DroEre_CAF1 14613 91 - 1
-CUGUAGAUGGGCGGGAUUCAGGAGUUGGAAAUCAAAUCAAAUU-UCGUCCAAAUGGGCGAAUGAUGUCCUGUCCGUUGAUGGACGA---ACUGCA
-((((.(((((((((((((((.((.(((.....))).))....(-((((((....)))))))))).)))))))))))).))))....---...... ( -32.40)
>DroYak_CAF1 17380 92 - 1
CCUGUUGAUGGGCGGGAUUCAGGAGUUGGAAAUCAAAUCAAAAU-UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGA---ACUGCA
.((((..((.((((((((((..((.(((.....))).))...((-(((.((....)).))))))).)))))))).))..))))....---...... ( -28.60)
>consensus
_CUGUAGAUGGGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAU_UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGA___ACUGCA
...((((...(((((((((((.((.(((.....))).))......(((.((....)).))).))).)))))))).(((....)))......)))). (-24.98 = -24.85 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006