Locus 4859

Sequence ID X_DroMel_CAF1
Location 12,636,628 – 12,636,736
Length 108
Max. P 0.540438
window7934

overview

Window 4

Location 12,636,628 – 12,636,736
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 69.57
Mean single sequence MFE -38.65
Consensus MFE -15.38
Energy contribution -15.78
Covariance contribution 0.39
Combinations/Pair 1.46
Mean z-score -1.70
Structure conservation index 0.40
SVM decision value 0.01
SVM RNA-class probability 0.540438
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12636628 108 + 22224390
AAACUGGGCAACCAGCGGAAUCAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGUCUGCAAAUGCAAUUGGUAUUGGGCGAAUCGUAUCAGGAU
...(((((((.(((((((.....))).))))........((....))..)))))))....(((..(((..(((.(((((.....)))))..)))...)))..)))... ( -33.60)
>DroVir_CAF1 6862 105 + 1
ACGUUGGCUGCUCAGCGUGAGCAUUGCCUGCAGCAGUUGAACCAGUUGCUGCCGCGUCAGCUGUCGCAGCUGCAGCAGCGUCUGUUGCACGGCAGC---GAUGCGGCG
..((.((((((((.....)))))..))).))((((..((...))..))))((((((((.(((((((....((((((((...)))))))))))))))---)))))))). ( -54.70)
>DroSec_CAF1 14891 108 + 1
AAACUGGGCAGCCAGCGGGAUCAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGUCGUCUGCAAAUGCAAUUGGUAUUGGGCGAAUCAUAUCAGGAU
...(((((((.(((((((.....))).))))........((....))..)))))))....((((.((((((...(((((.....)))))))))))......))))... ( -32.90)
>DroEre_CAF1 14442 108 + 1
AAGCUGAGCAGCCAGCAGGAACACAGCCUGGAACAGCUGAGGAAACUAAUGCCUGGACCACUGGGACGCCUCCAAAUGCAAUUGGUGUUGGGCGAGUCAUAUCAGGAG
...((((....((((.(((.......)))((..((((..((....))...).)))..)).))))..(((((((((......))))....))))).......))))... ( -30.60)
>DroYak_CAF1 5060 108 + 1
AAGUUGAGCAGCCAGCGGGAACAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGACUGCAAAUGCAAUUGGUACUGGGUGAAUCGUAUCAGGAU
.......(((.(((((((.....))).))))..((((((((....))....(((((....))))).))))))....)))..(((((((.((.....)))))))))... ( -30.50)
>DroMoj_CAF1 6701 105 + 1
UCGCUGGCCUCCCAGCGUGACCAUUGCCUGCAGCAGCUGAAUCAGCUGAUGCCGCAGCAGCUCUCGCAGCUGCAGCUGCGCCUUCUGCACGGCAGC---GAUGCGGCA
.((((((....)))))).......((((.(((.((((((...)))))).(((((..((((....((((((....))))))....)))).)))))..---..))))))) ( -49.60)
>consensus
AAGCUGGGCAGCCAGCGGGAACAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGGCUGCAAAUGCAAUUGGUACUGGGCGAAUC_UAUCAGGAU
..(((((....)))))..........(((((...((((.....))))..(((((((.(((.((...............)).)))...))))))).......))))).. (-15.38 = -15.78 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:41 2006