| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,523,918 – 12,524,008 |
| Length | 90 |
| Max. P | 0.586980 |
| Location | 12,523,918 – 12,524,008 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.85 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -22.54 |
| Energy contribution | -23.14 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12523918 90 - 22224390 UUCU----------------AAUACAUUCUAAUACAUUG--------------AAUUUCAUAGGUGGUCACGAUGCAUUGGCCUCGUUUGUGGACGUGGCCGUGCAGCAGCCGCAGUUAC ..((----------------(....((((.........)--------------)))....)))(((((.....(((((.((((.((((....)))).)))))))))...)))))...... ( -26.70) >DroSec_CAF1 53521 106 - 1 UCUUCCAGUCGGCCAUCGUGAACAUAAACUAAUACAGCC--------------AAUAUCAUAGGUGGUCACGAUGCAUUGGCCUCGUUUGUGGACGUGGCCGUGCAGCAGCCGCAGUUAC .......(.((((.(((((((...............(((--------------.........)))..)))))))((((.((((.((((....)))).))))))))....)))))...... ( -33.13) >DroEre_CAF1 53618 106 - 1 UCAG--------------GGCACAGCAACUAAAGCACCCACUUCGUUCUCCCCACUGCCAUAGGUGGCCACGACGCAUUGGCCUCGUUUGUGGACGUGGCCGUGCAGCAGCCGCAGCUGC ...(--------------((....((.......)).)))...((((.....(((((......)))))..)))).((((.((((.((((....)))).)))))))).(((((....))))) ( -36.40) >DroYak_CAF1 53894 99 - 1 UCAACCAA------AUCCUGCACAGAAACUAAUACACA---------------AUGUCCACAGGUGGUCACGAUGCAUUGGCCUCGUUUGUGGACGUGGCCGUGCAGCAGCCGCAAUUGC ........------...((((.................---------------.((.(((....))).))...(((((.((((.((((....)))).))))))))))))).......... ( -28.40) >DroAna_CAF1 64010 96 - 1 --AG--------------G--AUUCCGGCUAAUCCCCA--UUCUGUUUAU----CUCUUCCAGCCGGCCACGAUGCCCUGGCCUCGUUCGUGGACGUGGCGGUGCAGCAGCCCCAGCUCC --.(--------------(--(...(((((........--..........----.......)))))(((((((.((....)).))(((....))))))))((.((....)).))...))) ( -26.51) >consensus UCAG______________GGAACACAAACUAAUACACA_______________AAUUUCAUAGGUGGUCACGAUGCAUUGGCCUCGUUUGUGGACGUGGCCGUGCAGCAGCCGCAGUUAC ...............................................................(((((.....(((((.((((.((((....)))).)))))))))...)))))...... (-22.54 = -23.14 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:52 2006