Locus 482

Sequence ID X_DroMel_CAF1
Location 1,406,273 – 1,406,377
Length 104
Max. P 0.512986
window744

overview

Window 4

Location 1,406,273 – 1,406,377
Length 104
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 82.33
Mean single sequence MFE -36.48
Consensus MFE -26.70
Energy contribution -26.95
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 0.73
SVM decision value -0.04
SVM RNA-class probability 0.512986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1406273 104 - 22224390
CCGGCUUAGCGGGGAUCCGGAUACGGAUCCGCUACGGAUGCGGAUGCCGAUGCGAAUGCGAAUGCGAAUGUUCGUUUGCAUGCCACAGCUGUC--CCGACUCAUCA
.(((..(((((.(((((((....))))))).)...((.((((..(((....)))..)))).((((((((....)))))))).))...))))..--)))........ ( -40.00)
>DroSec_CAF1 11706 98 - 1
CCGGCUUAGCGUGGAUCCGGAUACAGAUCCGCUACGGAUGCGGAUGCCGAUGCGA------AUGCGAAUGUUCGUUUGCAUGCCACAGCUGCC--CCUGCUCAUCA
..(((..(((((((...(((......((((((.......)))))).)))((((((------(((........))))))))).)))).))))))--........... ( -32.90)
>DroEre_CAF1 8134 88 - 1
CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUGCGGAUGCGA------------------AUGCGGAUGUUCCUUUGCAUGCCACGGCUGCCCCCCGGCUCAUCA
((((....((..(((((((....)))))))((((.((((((((------------------(...((.....))))))))).)).)))).))...))))....... ( -37.60)
>DroYak_CAF1 8048 86 - 1
CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUACGGAUGCGG------------------AUGCGAAUGUUCCUUUGCAUGCCACAACUGCC--CCGGCUCAUCA
((((......(((((((((....)))))))))..(((.((.((------------------(((((((......))))))).)).)).)))..--))))....... ( -35.40)
>consensus
CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUACGGAUGCGG__________________AUGCGAAUGUUCCUUUGCAUGCCACAGCUGCC__CCGGCUCAUCA
..(((.((((..(((((((....)))))))))))...........................((((((((....)))))))))))......(((....)))...... (-26.70 = -26.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:40 2006