Locus 4814

Sequence ID X_DroMel_CAF1
Location 12,503,796 – 12,503,913
Length 117
Max. P 0.907602
window7871

overview

Window 1

Location 12,503,796 – 12,503,913
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -14.38
Consensus MFE -14.10
Energy contribution -14.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.98
SVM decision value 1.05
SVM RNA-class probability 0.907602
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12503796 117 + 22224390
UCUCCAUUCCCCUCUAGCCCCACUCUUCUUCUCUCUCCUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
................(((.....................((.....))....((((...((.(((((....))))).)).))))))).......((((.....))))......... ( -15.10)
>DroSec_CAF1 33161 114 + 1
ACUCCAUUCCCCUUUAGCCCCACUCU---UCUCUCUCUUCACUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
..........................---.................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10)
>DroSim_CAF1 30149 114 + 1
ACUCCAUUCCCCUUUAGCCCCACUCU---UCUCUCUCUUCACUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
..........................---.................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10)
>DroEre_CAF1 34532 106 + 1
CCAUCAUUCCCCUUUA--CCC---------CUCUCUCUUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
................--...---------..........((...((((....((((...((.(((((....))))).)).)))).))))..)).((((.....))))......... ( -14.50)
>DroYak_CAF1 28938 108 + 1
UCAUCAUUCCCCAUUAGCCCC---------CCCUCUCUUCGCCUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
.....................---------................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10)
>consensus
ACUCCAUUCCCCUUUAGCCCCACUCU___UCUCUCUCUUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU
..............................................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... (-14.10 = -14.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:44 2006