| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,405,017 – 12,405,109 |
| Length | 92 |
| Max. P | 0.745940 |
| Location | 12,405,017 – 12,405,109 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 97.28 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -19.05 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12405017 92 - 22224390 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGAUUUUUUAAAUCACAGCGAAUCGCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((............((((.....))))..(((((((...)))))))))))). ( -21.60) >DroSec_CAF1 7686 91 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU-UUAAAUCACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((......)-)))))....(((((((...)))))))))))). ( -20.60) >DroEre_CAF1 8178 92 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUUUUUAAAUCACAGCGAAUCUCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((.......))))))....(((((((...)))))))))))). ( -20.10) >DroYak_CAF1 8043 91 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU-UUAAAUUACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((......)-)))))....(((((((...)))))))))))). ( -20.60) >consensus GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU_UUAAAUCACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((.......))))))....(((((((...)))))))))))). (-19.05 = -19.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:50 2006