Locus 4765

Sequence ID X_DroMel_CAF1
Location 12,389,870 – 12,389,963
Length 93
Max. P 0.808993
window7804

overview

Window 4

Location 12,389,870 – 12,389,963
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 76.59
Mean single sequence MFE -29.40
Consensus MFE -9.10
Energy contribution -9.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.31
SVM decision value 0.64
SVM RNA-class probability 0.808993
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12389870 93 + 22224390
ACUGGGUCUUCCAUUUUCGGAUCCC-CCUCUCCUUAGUAGGAGGGGUCGGGGUGCGGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
..(((.....)))((..((.(((((-((((((((....))))))))..))))).))..))...(((..(((((....))))))))......... ( -35.30)
>DroSec_CAF1 3832 80 + 1
ACUGGGUCUUCUAUUUUCGGAUCCC-CCUCUUCUGAA--GG--GGGACA-------GA--CGGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
...((((((.........))))))(-(((((.....)--))--)))(((-------((--((.(((..(((((....)))))))).))))))). ( -31.20)
>DroSim_CAF1 21588 81 + 1
ACUGGGUCUUCUAUUUUCGGAUGCC-CCUCUUCUGAA--GG-GGGGACG-------GA--CGGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
.(((((.........)))))...((-(((((.....)--))-))))(((-------((--((.(((..(((((....)))))))).))))))). ( -30.30)
>DroEre_CAF1 3833 74 + 1
ACUGGGUCUUCUAUUUUCGGUGGCCCCCUCCUUUC--------------------GAGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
((((((.........))))))(((((((((.....--------------------))))))..(((..(((((....))))))))..))).... ( -22.00)
>DroYak_CAF1 8768 85 + 1
ACUGGGUCUUCUAUUUUCGGAGGUC-CUUCCUUUGGC--UU--GGGUUG----GAGGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
...((..((((.......))))..)-).(((((..((--..--..))..----)))))((..((((..(((((....)))))))).)..))... ( -28.20)
>consensus
ACUGGGUCUUCUAUUUUCGGAUGCC_CCUCUUCUGAA__GG__GGGACG______GGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG
.(((((.........)))))...........................................(((..(((((....))))))))......... ( -9.10 =  -9.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:40 2006