Locus 4751

Sequence ID X_DroMel_CAF1
Location 12,348,597 – 12,348,688
Length 91
Max. P 0.541900
window7788

overview

Window 8

Location 12,348,597 – 12,348,688
Length 91
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.24
Mean single sequence MFE -39.95
Consensus MFE -22.63
Energy contribution -22.49
Covariance contribution -0.14
Combinations/Pair 1.30
Mean z-score -1.95
Structure conservation index 0.57
SVM decision value 0.02
SVM RNA-class probability 0.541900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12348597 91 + 22224390
CACGAUCUGGUCGAAAGUC------------------CAGAUCAGGACCAGGGCAUGCUCGUUACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA
...(((((((.(....).)------------------)))))).......((((((((.((...(((((.....))))).)).))).........((....))))))). ( -40.40)
>DroSec_CAF1 25339 91 + 1
CACGAUCUGAUCGAAAGUC------------------CGGAUCAGGACCAGGGCAUGCUGGUCACUGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA
...((((((..(....)..------------------)))))).......((((..(((((.......))))).(((((..(((.((.....)))))..))))))))). ( -35.40)
>DroSim_CAF1 24686 91 + 1
CACGAUCUGGUCGAGAGUC------------------CAGAUCAGGACCAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA
...(((((((.(....).)------------------)))))).......(((((((((((((.(((......))).))))).))).........((....))))))). ( -40.10)
>DroEre_CAF1 25526 91 + 1
CACGAUUUGGUGGAAAGCC------------------CAGAUCAGGAACAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCGCGCUCCUGCUGCCCA
...(((((((........)------------------)))))).......(((((.((.((...(((((.....)))))..((((........)))).)).))))))). ( -36.20)
>DroYak_CAF1 27113 109 + 1
CACGAUCUGGUUGAAAGCCAGGAACAGCAGCAGGAUCCGGAUCAGGAUCAGGGCAUGCUGGUCACCGCCCAACCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA
.....((((((.....))))))....((((((((((((......))))).((((..(.(((((..((((.....))))((...)).))))).)..)))))))))))... ( -46.80)
>DroAna_CAF1 39094 91 + 1
CAGGAGCAGGAUCAGGAUC------------------AGGAUCAUGAUCAGGGUGUCCUGGUGACAGCACAGCCGGCUGCUGUCCAGACCACCGCCCUGCUGCUGCCCA
(((.((((((.....((((------------------(......)))))..((((..((((..((((((........))))))))))..))))..)))))).))).... ( -40.80)
>consensus
CACGAUCUGGUCGAAAGUC__________________CAGAUCAGGACCAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA
...((((((............................)))))).......(((((.........(((((.....)))))....((((............))))))))). (-22.63 = -22.49 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:26 2006