| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,341,581 – 12,341,678 |
| Length | 97 |
| Max. P | 0.946184 |
| Location | 12,341,581 – 12,341,678 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -19.35 |
| Energy contribution | -18.85 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12341581 97 - 22224390 CUAAGGUGUUU----AGUAUCAUUAUUUUUUUUCGGUGUAUUAUCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGGAGUGCACAUACAU .....((((..----((((....))))...((((((((....(((((((((.....))))((..(....)..))...))))))))))))).))))...... ( -19.70) >DroSec_CAF1 18331 92 - 1 UUAAGGCUUCU----AGUAGCAUUAUUG-UUCUCUGUGUAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGUGGUGCAC----AU .....(((...----...))).......-.....((((((((((...((((((((..(((.........))).....))))).))))))))))))----). ( -24.90) >DroSim_CAF1 17766 81 - 1 UUAAGGCU---------------UAUUG-UUCUCUGUGCAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGUGGUGCAC----AU ........---------------.....-.....((((((((((...((((((((..(((.........))).....))))).))))))))))))----). ( -24.30) >DroEre_CAF1 18551 96 - 1 UUGAAUAUUCUUUUCGCUAUCCUAAAUG-UUCUCCGUGCAUUACCUGGGCAUCUGUUGUCUGUUCUUUUGGCCAGAACAGAUCGCUGGGGUGCGC----AU ..(((((((...............))))-)))...((((...((((.(((((((((..((((..(....)..)))))))))).))).))))))))----.. ( -30.16) >consensus UUAAGGCUUCU____AGUAUCAUUAUUG_UUCUCUGUGCAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGGGGUGCAC____AU ...................................(((((((((...((((((((..(((.........))).....))))).))))))))))))...... (-19.35 = -18.85 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:25 2006