Locus 4747

Sequence ID X_DroMel_CAF1
Location 12,334,099 – 12,334,192
Length 93
Max. P 0.999221
window7784

overview

Window 4

Location 12,334,099 – 12,334,192
Length 93
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 88.47
Mean single sequence MFE -16.40
Consensus MFE -16.38
Energy contribution -16.22
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -2.16
Structure conservation index 1.00
SVM decision value 3.44
SVM RNA-class probability 0.999221
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12334099 93 + 22224390
GCGUAUCGGAAUGAA-------AUGCAAAGAACA--UCAAAAAAUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACACCAUAAACGCAGA
(((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).......))))... ( -15.40)
>DroSec_CAF1 11128 92 + 1
GCGUAUCGGAAUGAA-------AUCCAAAGAACC--CCAAAAACUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA
(((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).-.....))))... ( -15.60)
>DroSim_CAF1 11629 92 + 1
GCGUAUCGGAAUGAA-------AUCCAAAGAACC--CCAAAAACUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAGCGCAGA
(((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).-.....))))... ( -15.90)
>DroEre_CAF1 11014 98 + 1
GCGUAUCGGAAUGAAAUCUGAAAUCCGAAGAACC--ACAAAAACUUU-AAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA
(((((((((.......(((.........)))...--...........-..........((((((..---.))))))..)))))((....)).-.....))))... ( -16.80)
>DroYak_CAF1 12217 96 + 1
GCGUAUCGGAAUAAA-------AUCCAAAGAAUCUCUCAAAAACUUC-AAAACACAAAUCUUGGAGUCUCCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA
(((((((((......-------.((....)).(((((.....(((((-((..........)))))))......))))))))))((....)).-.....))))... ( -18.30)
>consensus
GCGUAUCGGAAUGAA_______AUCCAAAGAACC__CCAAAAACUCUAAAAACUCAAAUCUUGGAA___CCCAAGAGACCGAUGUAAUUACA_CAUAAACGCAGA
(((((((((....................(.......)....................((((((......))))))..)))))((....)).......))))... (-16.38 = -16.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:22 2006