Locus 4745

Sequence ID X_DroMel_CAF1
Location 12,328,449 – 12,328,542
Length 93
Max. P 0.519311
window7782

overview

Window 2

Location 12,328,449 – 12,328,542
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 75.33
Mean single sequence MFE -36.02
Consensus MFE -20.71
Energy contribution -20.97
Covariance contribution 0.25
Combinations/Pair 1.20
Mean z-score -1.42
Structure conservation index 0.58
SVM decision value -0.03
SVM RNA-class probability 0.519311
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12328449 93 + 22224390
A---UUUCCCAGGAGCAGCUCGAUCCGUUUCCUGGCCUCCACAAAGGCGGCCAUUACUUCGUCCAGAGUGGUGGCCCUCGAAGUAUCCGGAU-----UUGA
.---....((.(((...((((((...........((((......))))(((((((((((......))))))))))).))).))).)))))..-----.... ( -31.40)
>DroSec_CAF1 5596 93 + 1
G---UUUCCCAGGAGCAGCUCGAUCCGUUUCCUGGCCUCCACAAAGGCGGCCAUUACCUCGUCCAGAGUGGUGGCCCUCGCAGUAUCAGGAU-----UUGA
(---(((.....)))).........((..(((((((((......))))(((((((((.((.....)))))))))))..........))))).-----.)). ( -32.00)
>DroEre_CAF1 5309 93 + 1
G---GUUCCCAGGAGCAACUCGAUCCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAAGGUGGUGGCCCUCGAAGUAUCAGCGU-----UCGA
.---((((....))))...((((..((((.....((((......))))(((((((((((......)))))))))))...........)))).-----)))) ( -35.50)
>DroYak_CAF1 6826 93 + 1
G---GUUCCCAGCAGCAACUCGAUGCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAAGGUGGUGGCCCUCGAAGUAUCGGCAU-----UCGA
.---..........((....((((((.(((....((((......))))(((((((((((......)))))))))))...)))))))))))..-----.... ( -35.10)
>DroMoj_CAF1 3099 101 + 1
UGAUUUGCCCAAGAGCGCCGCGAUGCGGUCCCUGGCCUCGACGUAGGCAGCCAUCACCUCCUGCAGCGUGGUCGAGAUGGUCGCCUUGGGCUCGUGGCUAA
......(((((((.((((((((.((.(((.....))).)).))).))).((((((.(..((........))..).)))))).))))))))).......... ( -40.70)
>DroAna_CAF1 14123 96 + 1
GGCUUUCACCAGGAGGGACUCUAUUCUCUCCCUGGCCUCCACGUAGGCGGUCAUCACCUCGUCCAGAGUGGUGGCCCUGGCGGUGUCCGCCA-----CCGA
(((...((((.(((((((......)))))))...((((......))))(((((((((.((.....))))))))))).....))))...))).-----.... ( -41.40)
>consensus
G___UUUCCCAGGAGCAACUCGAUCCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAGAGUGGUGGCCCUCGAAGUAUCAGCAU_____UCGA
.........(((((((..........))).))))((((......))))(((((((((..........)))))))))......................... (-20.71 = -20.97 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:20 2006