Locus 4744

Sequence ID X_DroMel_CAF1
Location 12,326,687 – 12,326,807
Length 120
Max. P 0.864441
window7781

overview

Window 1

Location 12,326,687 – 12,326,807
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -24.28
Consensus MFE -22.68
Energy contribution -22.92
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.31
Structure conservation index 0.93
SVM decision value 0.84
SVM RNA-class probability 0.864441
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12326687 120 + 22224390
UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUAUCAUGCGGAUACAAUGGAGAAGUACUAUAACUACAAGGAAUACACCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC
....(((((.....))))).....(((((.((((((((.((((.....))))..)))).(((((.............((......)).((....)).)))))..)))))))))....... ( -22.30)
>DroSec_CAF1 4722 120 + 1
UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAAAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC
....(((((.....))))).....(((((.((((((.....((((..(....).))))...................(((....)))......)))))).........)))))....... ( -21.80)
>DroSim_CAF1 4808 120 + 1
UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC
......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... ( -25.30)
>DroEre_CAF1 4853 120 + 1
UUUUACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACCACAACUACAAGGAAUACUCCAACUACGGCCACUUCGAUUACUCCUUCUUCAAU
......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... ( -24.90)
>DroYak_CAF1 6441 120 + 1
UUCUACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUGCAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACACCUUCUUCAGC
......(((.((.....(((((((..(((((....))))).((((((....)).)))).)))))))...........(((....)))......)).)))..................... ( -27.10)
>consensus
UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC
......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... (-22.68 = -22.92 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:19 2006