Locus 4739

Sequence ID X_DroMel_CAF1
Location 12,316,711 – 12,316,806
Length 95
Max. P 0.766382
window7773

overview

Window 3

Location 12,316,711 – 12,316,806
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 93.87
Mean single sequence MFE -26.04
Consensus MFE -22.98
Energy contribution -23.98
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.52
SVM RNA-class probability 0.766382
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12316711 95 + 22224390
ACGGCCAUAAAAAGGAGCGUUGGUUGGAUCGAUCGAUCGAUGGAUCGGCUCAGUUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
(((.((.......))..)))(((((.(((((.((((((....))))))....((((((....)).)))))))))...)))))(((.....))).. ( -25.50)
>DroSec_CAF1 18898 95 + 1
ACAGCCAUAAAAAGGAGCGUUGGUUGAAUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
...(((((......((((((((((...))))))(((((....)))))))))..)))))............((((...)))).(((.....))).. ( -26.60)
>DroSim_CAF1 19375 95 + 1
ACAGCCAUAAAAAGGAGCGUUGGUUGAAUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
...(((((......((((((((((...))))))(((((....)))))))))..)))))............((((...)))).(((.....))).. ( -26.60)
>DroEre_CAF1 19301 91 + 1
ACGGCCAUAAAAAGGAGCGUUGGC----UCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
...(((........((((....))----))....((((....)))))))((((((.((....))......((((...)))).......)))))). ( -28.50)
>DroYak_CAF1 18374 87 + 1
ACAGCCAUAAAAAGGAGCGUUGG--------AUCGAUCGAUGGAUCGGCUCAGCUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
...((((...........((((.--------.((((((....))))))..))))))))............((((...)))).(((.....))).. ( -23.00)
>consensus
ACAGCCAUAAAAAGGAGCGUUGGUUG_AUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU
...(((((......(((((((((.....)))))(((((....)))))))))..)))))............((((...)))).(((.....))).. (-22.98 = -23.98 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:12 2006