| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,277,107 – 12,277,204 |
| Length | 97 |
| Max. P | 0.669036 |
| Location | 12,277,107 – 12,277,204 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -15.91 |
| Energy contribution | -16.42 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12277107 97 - 22224390 AGUACGGCGAAUACAGCUGACUGCUGCCGCCACUAUAGUAGUAGUUGGUUGAAUCCGAAUACAGAGGCAUUUUGCAGCA-----GUCACUCACUCAAACAAA .....(((.......)))(((((((((.(((((....)).(((.((((......)))).)))...))).....))))))-----)))............... ( -28.40) >DroVir_CAF1 16238 94 - 1 AAUAUGGUGAAUACAGCUGGCUGCUGCCGCCGCUGUAAUAAUAGUUGCUCGAAUCCGAAUAGAGCGGCAUUUUCUCUCGCUUUUUGCACUC----AA-C--- ....(((((.....(((.(((....)))(((((((((((....)))))(((....)))....))))))..........))).....))).)----).-.--- ( -27.20) >DroSec_CAF1 22669 86 - 1 AGUACGGCGAAUACAGCUGACUGCUGCCGCCACUAUAGUAGUAGUUGGUUGAAUCCGAAUACAGAGGCAUUUUGCAGCA-----GCCACUC----------- .....(((.....((((..((((((((..........))))))))..))))............(..((.....))..).-----)))....----------- ( -26.40) >DroEre_CAF1 20302 93 - 1 AGUACGGUGAGUACAGCUGGCUGCUGCCGCCACUAUAGUAGUAGUUGGUUGAAUCCGAGUACAGAGGCAUUUUGCAGCA-----GUCACUC----AAACAAA .((((.....))))((.((((((((((.(((((....)).(((.((((......)))).)))...))).....))))))-----)))))).----....... ( -32.60) >DroYak_CAF1 10731 93 - 1 AGUAGGGCGAGUACAGCUGACUGCUGCCGCCACUAUAGUAGUAGUUGGUUGAAUCCGAAUACAGCGGCAUUUUGCAGCA-----CUCACUC----AAACAAA ....(((.((((.((((..((((((((..........))))))))..))))............((.((.....)).)))-----))).)))----....... ( -31.20) >DroAna_CAF1 7108 92 - 1 AGUACGGCGAGUAGAGCUGACUGCUACCGCCGCUGUAGUAGUAGUUCGUGGAAUCCGAGUACAGAGGCAUUUUGUCACA--AUAUUCUUUU----AUA---- .((((..((..(...((.(((((((((..(....)..))))))))).))...)..)).))))...(((.....)))...--..........----...---- ( -23.20) >consensus AGUACGGCGAAUACAGCUGACUGCUGCCGCCACUAUAGUAGUAGUUGGUUGAAUCCGAAUACAGAGGCAUUUUGCAGCA_____GUCACUC____AAAC___ .(((...((.((.((((((((((((((..........)))))))))))))).)).))..)))........................................ (-15.91 = -16.42 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:51 2006