Locus 4718

Sequence ID X_DroMel_CAF1
Location 12,259,620 – 12,259,727
Length 107
Max. P 0.801824
window7741

overview

Window 1

Location 12,259,620 – 12,259,727
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -26.80
Consensus MFE -20.19
Energy contribution -19.92
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.75
SVM decision value 0.62
SVM RNA-class probability 0.801824
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12259620 107 + 22224390
GUCUG---UUGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAUUGGA--CAAUCCGACACCGA--------UGUGCCGCCC
((((.---.......))))......(((((((.....))))))).....((((.(((((((((.....)))))))......((((.--....))))....))--------))))...... ( -29.70)
>DroPse_CAF1 17536 114 + 1
GUCUG---CUGAUGAAAACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAU-GCA--CAAUCCGACACCGAGAGACCCACGAGCCUCCA
(((((---(...(((((........(((((((.....)))))))............(((((((.....))))))))))))..-)))--...((((....)).)))))............. ( -26.70)
>DroGri_CAF1 8748 100 + 1
GCCCC---UUGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGUUUCUUUCAAU-GCCAGUAACCAGUAAC-AG--------U--AG-----
.....---((((((....))))))..((((((.....))))))((((.........(((((((.....)))))))......(-((.........))).)-))--------)--..----- ( -17.10)
>DroSec_CAF1 6216 106 + 1
GUCUG---UUGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAU-GGA--CAAUCCGACACCGA--------CGUGCCGCCC
(((((---((((.............(((((((.....)))))))............(((((((.....)))))))..)))))-)))--)....((.(((...--------.))).))... ( -31.20)
>DroEre_CAF1 4200 106 + 1
GUCUG---CUGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAU-GGG--CAAUCCGACACCGA--------UGUACCGCCC
((((.---.......))))......(((((((.....)))))))............(((((((.....))))))).......-(((--(......(((....--------)))...)))) ( -27.80)
>DroWil_CAF1 5850 93 + 1
GUGUGCACUGGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAAAUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAU-GCAGCCAAUCA--------------------------
(..((((.((((.((........(((((((((.....)))))))))........))(((((((.....))))))).)))).)-)))..).....-------------------------- ( -28.29)
>consensus
GUCUG___UUGAUGAAGACAUUAAUUUGAUGCAAAUCGCGUCAACUGAACACAAUCGAAGUGCUAAUUGCGCUUCUUUCAAU_GCA__CAAUCCGACACCGA________UGUGCCGCCC
............(((((........(((((((.....)))))))............(((((((.....))))))))))))........................................ (-20.19 = -19.92 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:44 2006