Locus 4681

Sequence ID X_DroMel_CAF1
Location 12,199,643 – 12,199,744
Length 101
Max. P 0.994334
window7679

overview

Window 9

Location 12,199,643 – 12,199,744
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 98.61
Mean single sequence MFE -26.08
Consensus MFE -26.26
Energy contribution -25.86
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 1.01
SVM decision value 2.47
SVM RNA-class probability 0.994334
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12199643 101 - 22224390
UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA
.......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -27.40)
>DroSec_CAF1 25970 101 - 1
UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGUGUUGUAGCA
.......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -25.50)
>DroSim_CAF1 27151 101 - 1
UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA
.......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -27.40)
>DroEre_CAF1 25239 101 - 1
UCUAUCGGCAGCAGCGUUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGCGGAGCGUUGUAGCA
.......((.(((((((((......).....(((.(((....((((((((..(((.......)))..))))))))...)))...)))..)))))))).)). ( -25.10)
>DroYak_CAF1 10727 101 - 1
UCUAUCGGCAGCAGCGUUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA
.......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -25.00)
>consensus
UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA
.......((.((((((((...((...(((((((((......))(((((((..(((.......)))..))))))))))))))..))....)))))))).)). (-26.26 = -25.86 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006