Locus 4665

Sequence ID X_DroMel_CAF1
Location 12,187,100 – 12,187,208
Length 108
Max. P 0.613808
window7654

overview

Window 4

Location 12,187,100 – 12,187,208
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -35.48
Consensus MFE -22.81
Energy contribution -22.97
Covariance contribution 0.16
Combinations/Pair 1.19
Mean z-score -1.74
Structure conservation index 0.64
SVM decision value 0.16
SVM RNA-class probability 0.613808
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12187100 108 - 22224390
GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGGCUAUCUCGUUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA
.....(((((((((((((((((..((((---.(((..--------(((...((.(((............))).))....)))..))).))))....)))))))))...-...)))))))) ( -34.00)
>DroSec_CAF1 13567 108 - 1
GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGACUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA
.....(((((((((((((((((..((((---.(((..--------(((((((....))))...((........))....)))..))).))))....)))))))))...-...)))))))) ( -32.60)
>DroSim_CAF1 16810 108 - 1
GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGGCUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAA-AAAGCGAAAUA
.....(((((((((((((((((..((((---.(((..--------(((...((.(((((.......)).))).))....)))..))).))))....)))))))))...-...)))))))) ( -35.30)
>DroEre_CAF1 13542 108 - 1
GCGGCUGUUUCGUUUUGCCGGCGGAAAG---GAGACG--------CGAACAGCUGGCUGUCUCGCUCGCGCCUGCAACAUCGGAUCUGCUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA
.....(((((((((((((.((((((..(---....)(--------(((((((....)))).)))))).)))).)).........((((((.........))))))...-))))))))))) ( -39.60)
>DroAna_CAF1 25907 115 - 1
CCAGCUGUGUUC-UUGGCCGGAAAAAAAAUCGAGAAAAUAGCCGCCGGCCAGCUGGCCAUCUCGUUCUGGCCC----CGAUGGUUUUACUUCAUAAGCUGGCCAAAACAAAAGCAAAAAA
...(((((.(((-((((............))))))).)))))....(((((((((((((........))))).----..((((.......)))).))))))))................. ( -35.90)
>consensus
GCGGCUGUUUCGUUUUGCCGGCGAGAAG___GAGACA________CGAACAGCUGGCUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU_AAAGCGAAAUA
...(((......((((((((((.........((((((....................))))))((....)).........................)))))))))).....)))...... (-22.81 = -22.97 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:27 2006