| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,185,502 – 12,185,616 |
| Length | 114 |
| Max. P | 0.961929 |
| Location | 12,185,502 – 12,185,616 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 92.04 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -23.00 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12185502 114 + 22224390 UACAAAAAACCGAGCAAAAAAAAAAAAAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCUUC-CUUGGCAUAAAUA .........(((((..........................(((((.(((....))).))))).(((((((....((((...))))...)))))))......-)))))........ ( -23.10) >DroSec_CAF1 12120 106 + 1 AGCAA-AAACCGAGUAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGAGUGACAAGUGACUUGGACUCGCAGCUCCAUCUCUUGGCAUAAAUA .....-...(((((....--------.....................((((...)))).(((.(((((((((..((((...)))).))))))))).)))...)))))........ ( -28.30) >DroSim_CAF1 15349 107 + 1 AACAAAAAACCGAGCAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCAUCCCUUGGCAUAAAUA .........(((((....--------.....................((((...)))).(((.(((((((....((((...))))...))))))).)))...)))))........ ( -23.30) >DroEre_CAF1 12046 106 + 1 AACAAAAAGCCGAGUAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCC-UCCCUUGGCAUAAAUA ........((((((....--------..............(((((.(((....))).))))).(((((((....((((...))))...)))))))...-...))))))....... ( -27.70) >consensus AACAAAAAACCGAGCAAA________AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCAUCCCUUGGCAUAAAUA .........(((((..........................(((((.(((....))).))))).(((((((....((((...))))...))))))).......)))))........ (-23.00 = -23.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:26 2006