| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,177,969 – 12,178,081 |
| Length | 112 |
| Max. P | 0.538057 |
| Location | 12,177,969 – 12,178,081 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.23 |
| Mean single sequence MFE | -32.24 |
| Consensus MFE | -22.23 |
| Energy contribution | -22.57 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12177969 112 + 22224390 UAUUU--CGGUGCUCCAGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA------CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG .....--.((((.....(((.((((.((......((....))...)).)))).)))........((((((.------(((((((........)))))))..))))))))))......... ( -29.50) >DroEre_CAF1 5038 114 + 1 UAUUUUUGGGUGCUCCGGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA------CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG ..((..((((((..........(((((..((..(((..........)))..))..).))))...((((((.------(((((((........)))))))..))))))))))))..))... ( -34.40) >DroAna_CAF1 13501 116 + 1 UAUUU--CAGGUCUCUGGCAUUUUCGGUGGCAAUUGGUAACUUAAAUGAAGACUGUCCAGAUUUUGGAAAAAGCCCCCUGAAAUAGUAUCCAAUUUCAGGGUUGCCAC-CCCAUUUACC- .....--..(((...(((.......((((((((..(((..(((.....)))....(((((...)))))....)))(((((((((........))))))))))))))))-))))...)))- ( -32.81) >consensus UAUUU__CGGUGCUCCGGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA______CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG ........(((((....))))).(((((((....(((((((.....(((((.((....)).)))))...........(((((((........))))))).)))))))...)))))))... (-22.23 = -22.57 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:19 2006