| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,153,393 – 12,153,489 |
| Length | 96 |
| Max. P | 0.985571 |
| Location | 12,153,393 – 12,153,489 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.85 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -9.37 |
| Energy contribution | -9.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.985571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12153393 96 - 22224390 UUGUAUAUAGAGUUAAACAUGUUUUGUUAGAAUAGAAAAUGCUACGUAUUUUACUUUAAAUGCAACUUUAUCUAUGGAUCUAGGAAAUCUAAGGAA- ((((((.((((((..((((.....)))).......(((((((...))))))))))))).)))))).....(((.(((((.......))))).))).- ( -16.30) >DroSec_CAF1 6611 76 - 1 -------------------UAUUUAGUACUCAUA-CAAAUUAUACGUAUUUUACCUUAAAUGCAACUUUAUCUAUGGAACUAAC-GAUCUAUGGAAU -------------------...............-..........((((((......)))))).......((((((((.(....-).)))))))).. ( -13.20) >DroSim_CAF1 8667 76 - 1 -------------------UAUUUAGUACGCAUA-AAAAUUAUACGUAUUUUAACUUAAAUGCAACUUUAUCUAUGGAACUAAC-GAUCUAUGGAAU -------------------...............-..........((((((......)))))).......((((((((.(....-).)))))))).. ( -13.20) >consensus ___________________UAUUUAGUACGCAUA_AAAAUUAUACGUAUUUUACCUUAAAUGCAACUUUAUCUAUGGAACUAAC_GAUCUAUGGAAU .............................................((((((......)))))).......((((((((.........)))))))).. ( -9.37 = -9.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:08 2006