Locus 4646

Sequence ID X_DroMel_CAF1
Location 12,144,314 – 12,144,405
Length 91
Max. P 0.814490
window7631

overview

Window 1

Location 12,144,314 – 12,144,405
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -17.15
Consensus MFE -2.20
Energy contribution -2.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.13
SVM decision value 0.66
SVM RNA-class probability 0.814490
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12144314 91 - 22224390
UGGCCUCUUUU-AACUUUUUUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGCAACCCCCC--CCCC
((((.......-.........))))(--(-(((((..(....)((-((((........))))))..)))))))...................--.... ( -17.59)
>DroSec_CAF1 17435 83 - 1
UGGCCUCUUUU-AACUUUUGUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC----------CCCC
(((((......-.......).))))(--(-(((((..(....)((-((((........))))))..)))))))...........----------.... ( -18.52)
>DroEre_CAF1 16912 83 - 1
UGGCCUCUUUU-AACUUUUGUGCCAG--C-AGCGCAAGUUCUCGA-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC----------CCCC
(((((......-.......).))))(--(-(((((..(....)((-((((........))))))..)))))))...........----------.... ( -18.52)
>DroWil_CAF1 13608 83 - 1
UGGCCUCUGGGGAACUUUU--UCCAG--CUUGCGGAAACUCUCAAAAAACAUUUUCAACUUCUCAAGUGUUGCAAUUUCUCUCC----------UCC-
.((...((((..(....).--.))))--.(((((....)........(((((((..........))))))))))).......))----------...- ( -13.80)
>DroMoj_CAF1 22449 85 - 1
--G-CUUCACA-AACUUUU--GCCAGAGC-A----AAGUUGGC-A-AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUUGGCCAACCUCCGCACCA
--(-(......-....(((--((....))-)----))((((((-(-((((........)))))((((...........))))))))))....)).... ( -17.30)
>consensus
UGGCCUCUUUU_AACUUUU_UGCCAG__C_AGCGCAAGUUCUCGA_AAACAUUUUCAAGUUUUCAAGUGUUGCAAUUUCUCAGC__________CCCC
...............................................(((((((..........)))))))........................... ( -2.20 =  -2.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:06 2006