Locus 4628

Sequence ID X_DroMel_CAF1
Location 12,099,936 – 12,100,036
Length 100
Max. P 0.693039
window7605

overview

Window 5

Location 12,099,936 – 12,100,036
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -30.20
Consensus MFE -11.19
Energy contribution -13.19
Covariance contribution 2.00
Combinations/Pair 1.16
Mean z-score -2.71
Structure conservation index 0.37
SVM decision value 0.33
SVM RNA-class probability 0.693039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12099936 100 + 22224390
UUGCCACACUUCUGGCAAAUAUUAAAAAUCUUUCUCGCCUG---CCCAGCAGGUGGCGGGAUGGCAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU
((((((......)))))).......(((((((..(((((((---(...)))))))).((((.(((.(.(((............)))))))..))))))))))) ( -31.20)
>DroPse_CAF1 37769 91 + 1
UUGCCACACUUCUGGCAAAUAUUAAAAAAUCUCC--CCCCG---CCCAGCAGGUGGCCGUGGGAGGGCGCCAGAUUAAACUAUAA----UUUUCC-A--GUUU
((((((......)))))).........(((((((--(((((---((((.....)))..))))).)))....))))).........----......-.--.... ( -23.60)
>DroSec_CAF1 12252 103 + 1
UUGCCACACUUAUGGCAAAUAUUAAAAAUCUUUCUUGCCUGCCGCCCAGCAGGUGGCAGUAUGGCAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU
((((((......))))))..............(((((.((((((((.....))))))))...((.(((((.................))))).)))))))... ( -28.93)
>DroEre_CAF1 23823 98 + 1
UUGCCACACUUCUGGCAAAUAUUAAAAAUCUUUC--GCCUG---CCCAGCAGGUGGGCGGCUGGAGAAGCUCAACUGAAUUCCAGCCGCUUUUCCCAAGGUUU
((((((......)))))).......(((((((.(--(((((---(...)))))))(((((((((((...(......)..)))))))))))......))))))) ( -40.00)
>DroYak_CAF1 24275 96 + 1
UUGCCACACUUCUGGCAAAUAUUAAAAAUCCUUC--GCCUG---CCCAGCAGGUG-GCGGGUGGAAAAGCUCAACGAAAUUCCAGCCGCUU-UCCCAAGGUUU
((((((......))))))...........(((((--(((((---(...)))))))-((((.(((((...(.....)...))))).))))..-....))))... ( -33.90)
>DroPer_CAF1 37443 91 + 1
UUGCCACACUUCUGGCAAAUAUUAAAAAAUCUCC--CCCCG---CCCAGCAGGUGGCCGUGGGAGGGCGCCAGAUUAAACUAUAA----UUUUCC-A--GUUU
((((((......)))))).........(((((((--(((((---((((.....)))..))))).)))....))))).........----......-.--.... ( -23.60)
>consensus
UUGCCACACUUCUGGCAAAUAUUAAAAAUCCUUC__GCCUG___CCCAGCAGGUGGCCGGGUGGAAGAGCUCAACUAAAUUCCAGCCGCUUUUCCCAAGGUUU
..(((((.((.((((..............................)))).))))))).....((((((((.................))))))))........ (-11.19 = -13.19 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:43 2006