| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,094,269 – 12,094,360 |
| Length | 91 |
| Max. P | 0.814699 |
| Location | 12,094,269 – 12,094,360 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.65 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -19.69 |
| Energy contribution | -18.75 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12094269 91 - 22224390 ----------------CAUUGUAAUGCGG-UGGU------------GCGAGCAAUGAUGACGACGCCAACUGCAGGCGAUGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGAA ----------------((((((..(((((-((((------------(((..((....)).)).)))).)))))).))))))((((.((.....)).))))(((.(((....))).))).. ( -26.40) >DroPse_CAF1 31763 105 - 1 CAUGGAACACGGGGCACAUUGUAUUGCGGCUGGU---------UUCGCUUGCAUUG------ACGCCAACUGCAGACGGCGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGAA ............((((..(((((((((((.((((---------.(((.......))------).)))).))))......((((((.((.....)).))))))..)))))))..))))... ( -30.80) >DroSec_CAF1 7275 91 - 1 ----------------CAUUGUAAUGCGG-UGGU------------GCGAGCAAUGAUGACGACGCCAACUGCAGGCGAUGGCAAACAUUAUUUGAUUGCCGAAAAUGUAAAUUGUCGAA ----------------((((((..(((((-((((------------(((..((....)).)).)))).)))))).))))))((((.((.....)).))))(((.(((....))).))).. ( -26.40) >DroEre_CAF1 18320 103 - 1 ----------------CAUUGUAAUGCGG-UGGUGGCGCCGGUGGGGCAAGCAAUGAUGACGACGCCAACUGCAGGCGAUGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGUA ----------------((((((...((..-.....))(((.....)))..))))))(((((((((((.......)))).((((((.((.....)).))))))..........))))))). ( -32.10) >DroYak_CAF1 18819 100 - 1 ----------------CAUUAUAGCGCGG-UGGU---GCCGAUGGUGCCAGCAAUGAUGACGACGCCAACUGCAAGUGAUGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGAA ----------------((((((.((....-(((.---.((...))..))))).)))))).(((((.....((((..(..((((((.((.....)).)))))).)..))))...))))).. ( -30.30) >DroPer_CAF1 31442 105 - 1 CAUGGAACACGGGGCACAUUGUAUUGCGGCUGGU---------UUCGCUUGCAUUG------ACGCCAACUGCAGACGGCGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGAA ............((((..(((((((((((.((((---------.(((.......))------).)))).))))......((((((.((.....)).))))))..)))))))..))))... ( -30.80) >consensus ________________CAUUGUAAUGCGG_UGGU____________GCGAGCAAUGAUGACGACGCCAACUGCAGGCGAUGGCAAACAUUAUUUGAUUGCCGAAAAUGCAAAUUGUCGAA ..................((((...((((.((((............(....)............)))).))))..))))((((((.((.....)).)))))).................. (-19.69 = -18.75 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:38 2006