Locus 4621

Sequence ID X_DroMel_CAF1
Location 12,088,659 – 12,088,775
Length 116
Max. P 0.801300
window7595

overview

Window 5

Location 12,088,659 – 12,088,775
Length 116
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -22.88
Consensus MFE -13.71
Energy contribution -14.15
Covariance contribution 0.44
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.801300
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12088659 116 - 22224390
AAUUUACCAUUGAAAAGUACACCGAUAUAUCAUCUGAUCUUAUUUGGGCU-UCAUUCUUUUUGAGGCUUACAUAGGCC--CCCAAAAACUAAAGUCCUUUUCAGUUUCCAUUAAAUAUU
........(((((((((.((...(((.....)))....(((((.((((((-(((.......))))))))).)))))..--.............)).))))))))).............. ( -22.60)
>DroSec_CAF1 1480 118 - 1
AAUUUACCAUUGAAAAGUACAUCGAUAUAUCAUCUGAUCUUAUUCGGAUU-UUAGUCAUUUUGGGGCUUACAUAGGCCGCCCCUAAAACUAAAGUCCUUUCCAGUUGCCAUUAAAUAUU
.(((((.....((((((...((((((.....))).)))))).)))(((((-(((((..(((.(((((...........))))).)))))))))))))..............)))))... ( -23.60)
>DroEre_CAF1 12838 114 - 1
AAUUUAACGUUGAAAAGUACACCGAUGCAUCAUCCGAUUUUAUUCGGACU-GCAGUCCUUUUAAGGCUUACAUAGGCC--CCU--AAACUAAAGUCCUUUUCGGUUUCCAUUAAAUAUU
.((((((....((((((.((...((((((...(((((......))))).)-))).)).......(((((....)))))--...--........)).))))))((...)).))))))... ( -24.00)
>DroYak_CAF1 13148 106 - 1
AAUUUAACAUUGAAAAGUACACCGAUACAUCAAAUGAUCUGAUUCGGAUUUUUAGUC--UUUAAGGCUUACACA-----------AAGCAAAAGUCCUUUUCGGUUUACGUUAAAUAUU
.((((((((((((((((.((.((((...((((.......))))))))..........--......((((.....-----------))))....)).)))))))))....)))))))... ( -21.30)
>consensus
AAUUUAACAUUGAAAAGUACACCGAUACAUCAUCUGAUCUUAUUCGGACU_UCAGUC_UUUUAAGGCUUACAUAGGCC__CCC__AAACUAAAGUCCUUUUCAGUUUCCAUUAAAUAUU
........(((((((((.((.((((...(((....))).....)))).................(((((....)))))...............)).))))))))).............. (-13.71 = -14.15 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006