Locus 4615

Sequence ID X_DroMel_CAF1
Location 12,076,870 – 12,076,961
Length 91
Max. P 0.997034
window7587

overview

Window 7

Location 12,076,870 – 12,076,961
Length 91
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 70.34
Mean single sequence MFE -29.77
Consensus MFE -16.18
Energy contribution -17.41
Covariance contribution 1.23
Combinations/Pair 1.10
Mean z-score -2.41
Structure conservation index 0.54
SVM decision value 2.79
SVM RNA-class probability 0.997034
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12076870 91 - 22224390
UAAAGGGUUAAGUUGU-CUUCAAGGGCUCGUUGG------AAUCAAUAAAUGCGGGUGGUUGGUCCGACCAAACCGCCCAUC-UUAACCCCAUAAUGCC
....(((((((((((.-.(((((.(...).))))------)..))).......((((((((((.....)).))))))))..)-)))))))......... ( -31.30)
>DroSec_CAF1 12746 88 - 1
UAAAGGGUUAAGUUGU-CUUCAAGGGCUCGUUGG------CAUCAAUAAAUGCGGGUAG----UACGCCCAAACCGCCCAUCCUUAACCCCAUACUGCC
....(((((((((((.-...)))((((..(((.(------(((......))))((((..----...)))).))).))))...))))))))......... ( -28.60)
>DroAna_CAF1 11379 88 - 1
AAAAGGGUUAAGUUUUCCUUCGAUGGUGGGGUGGUGCUUCAAUCAAUAAAUGCGGGUGGGUGGUC-------AUCGCCCAGGCAUUACCCCCUUC----
..(((((........)))))....((.((((((((((((....((.....)).((((((......-------.))))))))))))))))))))..---- ( -29.40)
>consensus
UAAAGGGUUAAGUUGU_CUUCAAGGGCUCGUUGG______AAUCAAUAAAUGCGGGUGG_UGGUCCG_CCAAACCGCCCAUCCUUAACCCCAUACUGCC
....((((((((.............((..(((((........)))))....))((((((..............))))))...))))))))......... (-16.18 = -17.41 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:28 2006