Locus 4614

Sequence ID X_DroMel_CAF1
Location 12,072,535 – 12,072,640
Length 105
Max. P 0.987771
window7586

overview

Window 6

Location 12,072,535 – 12,072,640
Length 105
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 89.64
Mean single sequence MFE -35.02
Consensus MFE -33.26
Energy contribution -33.08
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -2.22
Structure conservation index 0.95
SVM decision value 2.09
SVM RNA-class probability 0.987771
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12072535 105 + 22224390
GUGAAAGUGAAAUGAUGGUCCUGGCCUCGAGCGUUCUUUUUGCCGGAAA-AGGUUACCGUUUCGCA--CACUUGCAGAAUAAACAUGACCCAUAGAAUUGGGUCACUU
(((...((((((((.(((.(((....(((.(((.......))))))...-)))))).)))))))).--)))..............(((((((......)))))))... ( -30.00)
>DroSec_CAF1 8396 107 + 1
GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUUCUGCCGGGAA-AGGUUACCGUUUCGCACACACUAGCAGAAUAAACAUGACCCAUAAAAUUGGGUCACUU
(((...(((((((((..(.(((..(((..((((.......)))))))..-))))..)))))))))...)))..............(((((((......)))))))... ( -39.00)
>DroEre_CAF1 7937 102 + 1
GUGAAAGUGAAAUGG-GGUCCUGGCCUCGGGCGCUCUUUUUGCCAGGAA-AGGUUACCACUUCGCA--CACUUGCAGAAUAAACAUGACCCAUA--AUUGGGUCGCUU
(((...(((((.(((-...(((..(((..((((.......)))))))..-)))...))).))))).--)))...............((((((..--..)))))).... ( -34.20)
>DroYak_CAF1 8821 104 + 1
GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUACUGCCAGGAAAAGGUAACCAUUUCGCA--CACUUACAGAAUAAACAUGACCCAUA--AUUGGGUCGCUU
(((...(((((((((..(.(((..(((..(((((....)).))))))...))))..))))))))).--)))...............((((((..--..)))))).... ( -36.90)
>consensus
GUGAAAGUGAAAUGGGGGUCCUGGCCUCGGGCGUUCUUUCUGCCAGGAA_AGGUUACCAUUUCGCA__CACUUGCAGAAUAAACAUGACCCAUA__AUUGGGUCACUU
(((...(((((((((...(((((((...(((....)))...)))))))........)))))))))...)))..............(((((((......)))))))... (-33.26 = -33.08 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:27 2006