Locus 4603

Sequence ID X_DroMel_CAF1
Location 12,060,179 – 12,060,279
Length 100
Max. P 0.700924
window7566

overview

Window 6

Location 12,060,179 – 12,060,279
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 85.02
Mean single sequence MFE -10.57
Consensus MFE -10.50
Energy contribution -10.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.12
Structure conservation index 0.99
SVM decision value 0.35
SVM RNA-class probability 0.700924
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12060179 100 + 22224390
CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCCCCAUACCCAAUCCCCAGUCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU
.....(((((((((.....)))))))))........................(((.(((..(((.....((........)).....)))...)))..))) ( -10.70)
>DroSec_CAF1 91676 80 + 1
CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAGUCC-------------CCA-------AUCCCCAAUGCUCAAUGGUCCGUUUCGGU
.....(((((((((.....)))))))))....................-------------...-------....(((........))).(((...))). ( -10.50)
>DroSim_CAF1 69023 87 + 1
CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCC-------------CCAAUCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU
.....(((((((((.....)))))))))....................-------------..............(((........))).(((...))). ( -10.50)
>consensus
CUCUUCUGGUUUUUCUGAUGAAAACCAGUUCUGCCCAAUCCUCAAUCC_____________CCA_UCCCCAAUCCCCAAUGCUCAAUGGUCCGUUUCGGU
.....(((((((((.....)))))))))...............................................(((........))).(((...))). (-10.50 = -10.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:10 2006