Locus 4590

Sequence ID X_DroMel_CAF1
Location 12,025,208 – 12,025,302
Length 94
Max. P 0.991817
window7551

overview

Window 1

Location 12,025,208 – 12,025,302
Length 94
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 75.28
Mean single sequence MFE -16.50
Consensus MFE -8.06
Energy contribution -9.90
Covariance contribution 1.84
Combinations/Pair 1.07
Mean z-score -2.47
Structure conservation index 0.49
SVM decision value 2.29
SVM RNA-class probability 0.991817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12025208 94 + 22224390
CAUUUCACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCAAACA-CCCACGCCCCCAUUUCA---
.........(((......-.......(-------(((...........))))((((((((.....))))))))............-.....))).........--- ( -17.60)
>DroSec_CAF1 57526 96 + 1
CAUUAAACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-ACA-CCCACGCCACCAUUUCACUC
........((((......-.......(-------(((...........))))((((((((.....))))))))........-...-.....))))........... ( -19.00)
>DroSim_CAF1 56126 96 + 1
CAUUUCACUGGCUCACAU-UUCUUUUU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-ACA-CCCACGCCACCAUUUCACUC
........((((......-.......(-------(((...........))))((((((((.....))))))))........-...-.....))))........... ( -19.10)
>DroEre_CAF1 53876 96 + 1
CAUUUCACUGGCUCACAU-UUCUUUCU-------CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA-GCACCCCACGCCCCCAUUUAC-CG
.........(((......-.......(-------(((...........))))((((((((.....))))))))........-.........))).........-.. ( -17.60)
>DroPer_CAF1 162341 101 + 1
CAUUUCACCCGCUCACUUUUUCUUUCUCCUUCCCCGGAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUUNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNN
..........((((..((((......(((......)))......))))..))))...........................-...----................. (  -9.20)
>consensus
CAUUUCACUGGCUCACAU_UUCUUUCU_______CCAAAUUGUUAAAAUGGAGCAUGCAAAAUAAUUGCGUGCACCCCGCA_ACA_CCCACGCCACCAUUUCA___
.........(((......................(((...........))).((((((((.....))))))))..................)))............ ( -8.06 =  -9.90 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006